Frugivorous bats often possess short intestines, and digest rapidly. These characters are thought to be weight-saving adaptations for flight. The hypothesis that they limit digestive efficiency was tested by assaying glucose and protein in fecal samples of a free-ranging bat, and in fruit of its main food plant. To assure the correct calculation of digestive efficiencies, seeds were used as a mass marker for nutrients in fruit and feces. Glucose represents 32.86%, and protein 0.65%, of the nutrient content of fruit. Digestive efficiencies for these nutrients respectively are 92.46% and 84.44%, clearly negating the hypothesis for glucose. Few studies have quantified protein in fruit. Instead, “crude protein”, a dietary parameter solely based on nitrogen determinations, is used as a surrogate of protein content. This study shows that, for fruit consumed by bats, crude protein estimates typically are much greater than true protein values, implying that a large fraction of the crude protein reported in previous studies consists of free amino acids. The rapid digestion of frugivores has the potential to limit protein digestion, thus it may require free amino acids for efficient assimilation of nitrogen; therefore, the crude protein approach is inadequate for the fruit that they consume because it does not differentiate free amino acids from protein. Adding simple sugars and free amino acids, instead of protein, to fruit reduce metabolic costs for plants. Direct assimilation of these small nutrient molecules increases digestive and foraging efficiencies. Both factors contribute to the persistence of the mutualism between plants and frugivores, with community-wide repercussions.