Abstract. We developed robust, three-dimensional methods, as opposed to traditional A-line analysis, for estimating the optical properties of calcified, fibrotic, and lipid atherosclerotic plaques from in vivo coronary artery intravascular optical coherence tomography clinical pullbacks. We estimated attenuation μ t and backscattered intensity I 0 from small volumes of interest annotated by experts in 35 pullbacks. Some results were as follows: noise reduction filtering was desirable, parallel line (PL) methods outperformed individual line methods, root mean square error was the best goodness-of-fit, and α-trimmed PL (α-T-PL) was the best overall method. Estimates of μ t were calcified (3.84 AE 0.95 mm −1 ), fibrotic (2.15 AE 1.08 mm −1 ), and lipid (9.99 AE 2.37 mm −1 ), similar to those in the literature, and tissue classification from optical properties alone was promising. © The Authors. Published by SPIE under a Creative Commons Attribution 3.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.