Coastal eutrophication poses an increasing risk to ecosystem health due to enhanced nutrient loading to the global coastline. Submarine groundwater discharge (SGD) represents a significant pathway for nitrate‐nitrogen (NO3‐N) transport to the coast, but diffusive SGD transport is difficult to monitor directly, given the low flux rates and expansive discharge areas. In contrast, focused SGD from intertidal springs can potentially be sampled and directly gauged, providing unique insight into SGD and associated contaminant transport. Basin Head is a coastal lagoon in Prince Edward Island, Canada that is a federally protected ecosystem. Nitrate‐nitrogen is conveyed from agricultural fields in the contributing watershed to the eutrophic lagoon via intertidal groundwater springs and groundwater‐dominated tributaries. We used several field methods to characterize groundwater discharge, nutrient loading, and in‐channel mixing associated with intertidal springs. The tributaries and intertidal springs were gauged and sampled to estimate a representative summer nitrate load to the lagoon. Our analysis revealed that NO3‐N export to the lagoon through tributaries and springs throughout summer 2023 was on average 401 kg N/month, with the combined spring loading comparable in magnitude to the combined tributary loading. We collected thermal infrared and visual imagery using drone surveys and found spatial overlap between cold‐water plumes from the spring discharge and macroalgae blooms, indicating the local thermal and ecosystem impacts of the focused SGD. We also mapped the electrical resistivity (salinity) distribution in the water column around one large spring with electromagnetic geophysics at different tidal stages to reveal the three‐dimensional spring plume dynamics. Results showed that the fresher spring water floated above the saline lagoon water with the brackish plume oriented in the direction of the tidal current. Collectively, our multi‐pronged field investigations help elucidate the hydrologic, thermal, and nutrient dynamics of intertidal springs and the cascading ecosystem impacts.