Involvement of plant C2H2-type zinc finger transcription factors in stress responses

Kiełbowicz-Matuk, Agnieszka

doi:10.1016/j.plantsci.2011.11.015

Cited by 226 publications

(164 citation statements)

References 81 publications

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“…Nuclear Factor Y subunit A (NF-YA) family was enriched at 12 h after NaHCO 3 stress. These transcription factors have already been reported to play roles in plant response to abiotic stress (Ge et al, 2010; Kielbowicz-Matuk, 2012; Li et al, 2013; Yong et al, 2014; Dey and Vlot, 2015). No transcription factor family was enriched at 24 h after NaHCO 3 stress.…”

Section: Resultsmentioning

confidence: 99%

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq

et al. 2016

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Soil alkalinity is a major abiotic constraint to crop productivity and quality. Wild soybean (Glycine soja) is considered to be more stress-tolerant than cultivated soybean (G. max), and has considerable genetic variation for increasing alkalinity tolerance of soybean. In this study, we analyzed the transcriptome profile in the roots of an alkalinity tolerant wild soybean variety N24852 at 12 and 24 h after 90 mM NaHCO3 stress by RNA-sequencing. Compared with the controls, a total of 449 differentially expressed genes (DEGs) were identified, including 95 and 140 up-regulated genes, and 108 and 135 down-regulated genes at 12 and 24 h after NaHCO3 treatment, respectively. Quantitative RT-PCR analysis of 14 DEGs showed a high consistency with their expression profiles by RNA-sequencing. Gene Ontology (GO) terms related to transcription factors and transporters were significantly enriched in the up-regulated genes at 12 and 24 h after NaHCO3 stress, respectively. Nuclear factor Y subunit A transcription factors were enriched at 12 h after NaHCO3 stress, and high percentages of basic helix-loop-helix, ethylene-responsive factor, Trihelix, and zinc finger (C2H2, C3H) transcription factors were found at both 12 and 24 h after NaHCO3 stress. Genes related to ion transporters such as ABC transporter, aluminum activated malate transporter, glutamate receptor, nitrate transporter/proton dependent oligopeptide family, and S-type anion channel were enriched in up-regulated DEGs at 24 h after NaHCO3 treatment, implying their roles in maintaining ion homeostasis in soybean roots under alkalinity. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis showed “phenylpropanoid biosynthesis” and “phenylalanine metabolism” pathways might participate in soybean response to alkalinity. This study provides a foundation to further investigate the functions of NaHCO3 stress-responsive genes and the molecular basis of soybean tolerance to alkalinity.

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Section: Resultsmentioning

confidence: 99%

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq

et al. 2016

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“…ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) is a member of the C2H2-type plant-specific zinc (Zn) finger transcription factor family, subclass C1-2i, containing at least 20 members in Arabidopsis (Englbrecht et al, 2004;Ciftci-Yilmaz and Mittler, 2008;Miller et al, 2008;Kiełbowicz-Matuk, 2012). ZAT12 induction is an abiotic stress marker.…”

mentioning

confidence: 99%

ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses

et al. 2015

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“…On the other hand, C 2 H 2 -type zinc finger proteins are induced by different abiotic factors such as cold, salinity, drought and oxidative stresses, and they have been shown to play diverse roles in the plant stress response and the hormone signal transduction (Kielbowicz-Matuk, 2012). Here, the C 2 H 2 zinc finger family (BIN 27.3.11) was significantly up-regulated in HW treated fruit after 24 h of cold storage (Fig.…”

Section: Regulation Of Transcriptionmentioning

confidence: 91%

Early transcriptional responses to chilling stress in tomato fruit with hot water pre-treatment

Cruz‐Mendívil

López‐Valenzuela

Calderón‐Vázquez

et al. 2015

Postharvest Biology and Technology

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Involvement of plant C2H2-type zinc finger transcription factors in stress responses

Cited by 226 publications

References 81 publications

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq

Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq

ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses

Early transcriptional responses to chilling stress in tomato fruit with hot water pre-treatment

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