Zirconium alloys are subjected to a fast neutron flux in nuclear reactors, inducing the creation of a large number of point defects, both vacancy and self-interstitial. These point defects then diffuse and can be trapped by their different sinks or can cluster to form larger defects, such as vacancy and interstitial clusters. In this work, the trapping capability of small-vacancy clusters (two/three vacancies, V2/V3) in the α-Zr doped with alloying elements (Sn, Fe, Cr, and Nb) has been investigated by first-principle calculations. Calculation results show that for the supercells of α-Zr containing 142-zirconium atoms with the two-vacancy cluster, alloying elements of Sn and Nb in the second vacant site (V2) and Cr in the first vacant site (V1) are more easily trapped by two vacancies, respectively. However, the two sites are both captured more easily by two vacancies for Fe in the supercells of α-Zr containing 142-zirconium atoms inside due to the similar value of the Fermi level. For the supercells of α-Zr containing 141-zirconium atoms with the three-vacancy cluster, the alloying element of Sn in the third vacant site (V’3), Fe in the first vacant site (V’1), and Cr and Nb in the second vacant site (V’2) are more easily trapped by three vacancies, respectively.