The structural arrangement of cholesteryl esters in human plasma low density lipoproteins (LDL) has been studied by selective deuteration and neutron small-angle scattering. LDL were labeled by in vitro exchange with two different kinds of deuterated cholesteryl esters, one labeled in the fatty acyl chain (cholesteryl myristate-d27) and the other in the branched side chain of cholesterol (cholesteryl-25,26,27-d7 oleate). Neutron scattering data from deuterated and protonated LDL were compared to identify the locations of the fatty acyl and cholesterol side chain moieties. Below the thermotropic transition, radii of gyration of 60 A and 70 A were obtained for these two domains, respectively, indicating that the cholesteryl nuclei are situated more distantly from the center than the fatty acyl chains. At 370C, above the thermotropic transition of the cholesteryl esters in LDL, both parts have similar radii of gyration of -56 A. This information is used in a discussion of possible structural models for the apolar lipid core of LDL.Control of cholesteryl ester transport in the bloodstream and control of their catabolism are considered as determining factors in normal or pathological lipid metabolism (1, 2). Normally, most of the circulating cholesteryl esters are contained within lipoprotein particles of the low density class (LDL, Mr = 2-3 x 106). Much effort has been devoted to their structural elucidation to provide the basis for an understanding of the various transport and regulatory processes in which LDL is involved (for reviews on LDL structure, see refs. 3-5).The present knowledge on LDL structure has originated to a large extent from x-ray and neutron small-angle scattering (6-17). In essence, all of these studies concur in indicating a quasi-spherical structure of about 240 A in diameter with an apolar core of neutral lipids, mainly cholesteryl esters, and an amphiphatic shell of protein, phospholipids, and unesterified cholesterol. Deckelbaum et al. (14,15) showed that the apolar lipids within LDL undergo a reversible order-disorder transition in the physiological temperature range. Detailed small-angle scattering analyses (9,16,17) suggested that, below the transition, the core of about 150 A in diameter is formed by concentric shells with a repeat of about 37 A. This order is abolished by heating through the transition range, which in its exact temperature depends on various compositional and structural factors (15,18,19).Although the analogy in thermal behavior to isolated cholesteryl ester mesophases indicated that they are responsible for the ordered structure in the core of LDL, the models proposed so far relied on the structure of pure cholesteryl ester phases-e.g., that of cholesteryl myristate (20, 21). In the search for more direct information, we have undertaken the present neutron small-angle scattering study on LDL isomorphously labeled by cholesteryl esters deuterated either in the fatty acid (I) or in the cholesteroi portion (II) (Fig. 1). The location of these deuterated domains, ...