The composition of photosystem II (PSII) in the chlorophyll (Chl) d-dominated cyanobacterium Acaryochloris marina MBIC 11017 was investigated to enhance the general understanding of the energetics of the PSII reaction center. We first purified photochemically active complexes consisting of a 47-kDa Chl protein (CP47), CP43 (PcbC), D1, D2, cytochrome b 559, PsbI, and a small polypeptide. The pigment composition per two pheophytin (Phe) a molecules was 55 ؎ 7 Chl d, 3.0 ؎ 0.4 Chl a, 17 ؎ 3 ␣-carotene, and 1.4 ؎ 0.2 plastoquinone-9. The special pair was detected by a reversible absorption change at 713 nm (P713) together with a cation radical band at 842 nm. FTIR difference spectra of the specific bands of a 3-formyl group allowed assignment of the special pair. The combined results indicate that the special pair comprises a Chl d homodimer. The primary electron acceptor was shown by photoaccumulation to be Phe a, and its potential was shifted to a higher value than that in the Chl a/Phe a system. The overall energetics of PSII in the Chl d system are adjusted to changes in the redox potentials, with P713 as the special pair using a lower light energy at 713 nm. Taking into account the reported downward shift in the potential of the special pair of photosystem I (P740) in A. marina, our findings lend support to the idea that changes in photosynthetic pigments combine with a modification of the redox potentials of electron transfer components to give rise to an energetic adjustment of the total reaction system. Acaryochloris marina ͉ FTIR ͉ reaction center ͉ photosynthesis ͉ electron transfer C hlorophyll (Chl) a has a ubiquitous role as an electron donor in the photochemical reactions of oxygenic photosynthesis, in which two kinds of photosystem, namely photosystem I (PSI) and photosystem II (PSII), cooperatively drive photosynthetic electron flow from water to NADP ϩ . The reduced cofactor, NADPH, is then used for CO 2 fixation. Chl a is a key pigment that serves as an electron donor called the special pair in PSI and PSII. Acaryochloris spp. are unique cyanobacteria that differ from the majority of photosynthetic organisms by having Chl d (3-desvinyl-3-formyl Chl a) (1-4) as the major pigment (Ͼ95%); Chl a is a minor component but is never absent (5, 6). In photosynthetic organisms, changes in pigment composition affect both the function of pigments and their reaction environments, including the modified proteins that accommodate them. Photosynthetic pigments function in two roles: as lightharvesting components and as electron transfer components. Light harvesting is mainly governed by the orientation and energy levels of pigments, and, in this context, a particular excitation energy level is not an absolute precondition for function, but a relative one. On the other hand, electron transfer reactions are governed by an absolute redox potential, because the photosynthetic oxidation of water requires a very high potential, whereas reduction of NADP ϩ requires a very low potential. For this reason, it is of particul...