Brown Ring Disease (BRD) is a bacterial disease caused by Vibrio tapetis which affects cultured clams and causes heavy economic losses. In this study, 28 V. tapetis strains isolated from 5 different hosts were intraspecifically characterized by 3 different polymerase chain reaction-(PCR-) based typing methods: enterobacteria repetitive intergenic consensus (ERIC)-PCR, repetitive extragenic palindromic (REP)-PCR and randomly amplified polymorphic DNA (RAPD)-PCR. Cluster analysis of genetic profiles obtained from these molecular techniques clearly showed the existence of 3 genetic groups strongly correlated to the host origin. The first group was formed by 23 V. tapetis strains isolated from Manila clam Ruditapes philippinarum, 1 isolated from venus clam Venerupis aurea, and 1 isolated from common cockle Cerastoderma edule, all collected from France and Spain. The second group was formed by 2 strains isolated from carpet-shell clam R. decussatus cultured in the northwest of Spain. The third group was composed of 1 strain isolated from Atlantic halibut Hippoglossus hippoglossus from the UK. We concluded that the 3 typing methods based on PCR were useful for the intraspecific typing of V. tapetis strains, and that they can potentially be used as a fast and reliable tool for epidemiological studies in the future.
KEY WORDS: Vibrio tapetis · RAPD · ERIC-PCR · REP-PCR · Typing
Resale or republication not permitted without written consent of the publisherDis Aquat Org 69: [175][176][177][178][179][180][181][182][183] 2006 demonstrated some genetic variations among V. tapetis strains (Castro et al. 1997, Romalde et al. 2002, Chevalier et al. 2003.Repetitive element PCR is a group of techniques that generates DNA fingerprints which can be utilized for the discrimination of bacterial species and/or strains (Versalovic et al. 1991(Versalovic et al. , 1994. These methods involve the application of oligonucleotide primers based on families of short, highly conserved extragenic repetitive sequences, including the repetitive extragenic palindromic (REP) and the enterobacterial repetitive intergenic consensus (ERIC) sequences (Stern et al. 1984, Hulton et al. 1991. REP and ERIC sequences are present in species throughout the Enterobacteriaceae family (Versalovic et al. 1991, Bachellier et al. 1999. The use of appropriate outward-facing PCR primers directed at these repeated sequences generates multiple amplification products, which reflect distance polymorphisms between adjacent DNA repeats. PCR with primers based on ERIC and REP sequences has been successfully used to differentiate bacterial strains from diverse species (de Bruijn 1992, Bennasar et al. 2002, Bruant et al. 2003, Hahm et al. 2003.The RAPD assay is based on the use of short random sequence primers, 9 to 10 bases in length, which hybridize with sufficient affinity to chromosomal DNA sequences to render a pattern of bands that is used for fingerprinting bacterial strains (Welsh & McClelland 1990, Williams et al. 1990. A number of studies have reported...