The influence of the underlying substrate on the UV initiated polymerization of diacetylene lipid
monolayers was investigated using absorption spectroscopy and Brewster angle microscopy (BAM). The
lipid/substrate affinity was tuned through choice of lipid headgroup as well as substrate properties. Lipids
with positively charged headgroups, which readily polymerized in both blue (6 °C) and red (16 °C) polymer
forms at the air/water interface, failed to polymerize when transferred to glass or hydrophobic glass
(headgroups facing ambient) at either temperature. BAM analysis revealed that the diacetylene film was
disordered on hydrophobic glass, which likely impeded the topochemical polymerization. On glass, however,
BAM showed a highly crystalline film identical to that seen at the air/water interface, suggesting that
strong interactions between the positively charged lipid headgroups and the glass inhibited polymerization
in this case. In agreement, when the lipid/substrate interactions were reduced, either by introducing a
cadmium arachidate bilayer between the diacetylene film and the glass or by substituting mica for glass,
a limited polymerization occurred, forming the red film exclusively. As a further test, monolayers of acidic
diacetylene lipids were deposited on glass. In this case polymerization was possible in both blue and red
forms but diminished as the transferred film was aged. These results suggest that a strong lipid/substrate
affinity may impede the topochemical polymerization, possibly by restricting the mobility of the lipids. By
investigating polymerization as a function of substrate and headgroup chemistry, several factors influencing
the lability of diacetylene films toward topochemical polymerization are presented.