Juvenile hormone (JH) represses precocious metamorphosis of larval to pupal and adult transitions in holometabolous insects. The early JH-inducible gene Krüppel homolog 1 (Kr-h1) plays a key role in the repression of metamorphosis as a mediator of JH action. Previous studies demonstrated that Kr-h1 inhibits precocious larval-pupal transition in immature larva via direct transcriptional repression of the pupal specifier Broad-Complex (BR-C). JH was recently reported to repress the adult specifier gene Ecdysoneinduced protein 93F (E93); however, its mechanism of action remains unclear. Here, we found that JH suppressed ecdysone-inducible E93 expression in the epidermis of the silkworm Bombyx mori and in a B. mori cell line. Reporter assays in the cell line revealed that the JH-dependent suppression was mediated by Kr-h1. Genome-wide ChIP-seq analysis identified a consensus Kr-h1 binding site (KBS, 14 bp) located in the E93 promoter region, and EMSA confirmed that Kr-h1 directly binds to the KBS. Moreover, we identified a C-terminal conserved domain in Kr-h1 essential for the transcriptional repression of E93. Based on these results, we propose a mechanism in which JH-inducible Kr-h1 directly binds to the KBS site upstream of the E93 locus to repress its transcription in a cell-autonomous manner, thereby preventing larva from bypassing the pupal stage and progressing to precocious adult development. These findings help to elucidate the molecular mechanisms regulating the metamorphic genetic network, including the functional significance of Kr-h1, BR-C, and E93 in holometabolous insect metamorphosis.H olometabolous insects undergo a complete metamorphosis, which consists of egg, larval, pupal, and adult stages. Larvalpupal and pupal-adult metamorphoses are coordinated by the actions of ecdysteroids and juvenile hormone (JH) (1). In the presence of JH, 20-hydroxyecdysone (20E; the active metabolite of ecdysteroids) induces larval-larval molting, whereas, in the absence of JH, it induces larval-pupal and pupal-adult molts (1). Thus, the major function of JH is to prevent immature larvae from precociously transitioning to pupae and adults (1).The molecular action of 20E in target cells during the larvalpupal transition was initially proposed in the 1970s (2), and its molecular mechanisms were well characterized by later studies. In particular, the 20E-liganded ecdysone receptor (EcR)/ultraspiracle (USP) complex directly activates the expression of a few early ecdysone-inducible transcription factors, which then regulate a large number of late ecdysone-inducible genes involved in pupal formation (3-5). The molecular mechanism of JH signaling has been clarified more recently (6-8). The JH receptor methoprene tolerant (Met) was found to bind JH (9-12) and subsequently interact with steroid receptor coactivator (SRC; also known as FISC and Taiman) (13-15). The JH/Met/SRC complex then activates Krüppel homolog 1 (Kr-h1) (15, 16), which plays a key role in the repression of metamorphosis (17-20).The transcription factor Broa...