Helicenes are an
extremely interesting class of conjugated molecules
without asymmetric carbon atoms but with intrinsic chirality. These
molecules can interact with double-stranded chiral B-DNA architecture,
modifying after their adsorption the hydrophilicity exposed by DNA
to the biological environment. They also form ordered structures due
to self-aggregation processes with possible different light emissions.
Following initial studies based on molecular mechanics (MM) and molecular
dynamics (MD) simulations regarding the adsorption and self-aggregation
process of 5-aza[5]helicenes on double-stranded B-DNA, this theoretical
work investigates the interaction between (
M
)- and
(
P
)-5-aza[6]helicenes with double-helix DNA. Initially,
the interaction of the pure single enantiomer with DNA is studied.
Possible preferential absorption in minor or major grooves can occur.
Afterward, the interaction of enantiopure compounds (
M
)- and (
P
)-5-aza[6]helicenes, potentially occurring
in a racemic mixture at different concentrations, was investigated,
taking into consideration both competitive adsorption on DNA and the
possible helicenes’ self-aggregation process. The structural
selectivity of DNA binding and the role of helicene concentration
in adsorption and the self-aggregation process are interesting. In
addition, the ability to form ordered structures on DNA that follow
its chiral architecture, thanks to favorable van der Waals intermolecular
interactions, is curious.