Uncontrolled cell proliferation is one of the hallmarks of cancer and the transition from the G1 to S phase is the most commonly reported cell cycle abnormality in tumors. It has been shown that the oncogenic activity of G1 cyclin E (CCNE) can be amplified by generating hyperactive low molecular weight forms (LMW) through elastase-mediated proteolytic processing. Neutrophil elastase (NE) and proteinase 3 (PR3) are 2 proteases that are aberrantly expressed in breast cancer cells and seem to be involved in cell proliferation. In this study, we evaluated the effect of the expression of these 2 proteases in addition to 2 potential intracellular targets of NE (CCNE1 and CCNE2) on clinical outcome in a population of 205 primary breast cancer patients. By univariate analysis, CCNE1, CCNE2, estrogen receptor and grade significantly predicted relapse free interval (RFI). NE and PR3 did not achieve statistical significance. In a multivariate analysis, elevated CCNE2 [hazard ratio (HR) 2.10, p 5 0.008] predicted shorter RFI. In subgroup analyses of the tamoxifen-only treated patients, high CCNE1 levels predicted treatment resistance, while high levels of CCNE2 were associated with poor RFI in untreated patients. Investigation of the relationship between CCNE1, CCNE2 and NE did not show any impact on RFI. To conclude, this study was the first to evaluate these markers at the mRNA level by RT-PCR in a series of primary breast cancer patients, and our results confirmed the impact of high CCNE levels on clinical outcome in systemically untreated and of CCNE1 in tamoxifen-only treated early breast cancer patients. ' 2006 Wiley-Liss, Inc.Key words: breast cancer; elastase; proteinase 3; cyclin E; mRNA Uncontrolled cell proliferation is one of the hallmarks of cancer and the transition from the G1 to S phase is the most commonly reported cell cycle abnormality in tumors. 1 Cyclin E (CCNE), a G1 cyclin which is essential for S-phase entry, has a profound role in oncogenesis, 2,3 and its overexpression has been repeatedly linked with poor patient outcome in breast cancer (reviewed in Ref. 4) and with endocrine therapy failure. 5 Recent studies identified low molecular weight isoforms (LMW) of CCNE, generated specifically in tumors by elastase-mediated proteolytic processing, 6 which were shown to be hyperactive compared to full-length CCNE and associated with poor clinical outcome in stage I to III breast cancer patients. 7 Recently, it has been shown that high levels of neutrophil elastase (NE) protein in breast cancer tissue extracts were associated with poor clinical outcome and with endocrine treatment failure in patients with advanced breast cancer disease. 8,9 This prognostic value was supposedly linked with the essential role of NE in the degradation of the extracellular matrix and the metastasis process. 10,11 But since NE may be aberrantly produced by breast cancer cells themselves and because NE has been implicated in the intracellular cleavage of CCNE in its LMW forms, its prognostic value may be linked to its property ...