Some transmembrane proteins must associate with lipid rafts to function. However, even if acylated, transmembrane proteins should not pack well with ordered raft lipids, and raft targeting is puzzling. Acylation is necessary for raft targeting of linker for activation of T cells (LAT). To determine whether an acylated transmembrane domain is sufficient, we examined raft association of palmitoylated and nonpalmitoylated LAT transmembrane peptides in lipid vesicles by a fluorescence quenching assay, by microscopic examination, and by association with detergent-resistant membranes (DRMs). All three assays detected very low raft association of the nonacylated LAT peptide. DRM association was the same as a control random transmembrane peptide. Acylation did not measurably enhance raft association by the first two assays but slightly enhanced DRM association. The palmitoylated LAT peptide and a FLAG-tagged LAT transmembrane domain construct expressed in cells showed similar DRM association when both were reconstituted into mixed vesicles (containing cell-derived proteins and lipids and excess artificial raft-forming lipids) before detergent extraction. We conclude that the acylated LAT transmembrane domain has low inherent raft affinity. Full-length LAT in mixed vesicles associated better with DRMs than the peptide. However, cells appeared to contain two pools of LAT, with very different raft affinities. Since some LAT (but not the transmembrane domain construct) was isolated in a protein complex, and the Myc-and FLAG-tagged forms of LAT could be mutually co-immunoprecipitated, oligomerization or interactions with other proteins may enhance raft affinity of one pool of LAT. We conclude that both acylation and other factors, possibly proteinprotein interactions, target LAT to rafts.Recent years have seen an explosion of interest in membrane microdomains called lipid rafts (1-3). Rafts have been implicated in processes as diverse as signal transduction (1, 4), membrane trafficking (5, 6), and apoptosis (7). In addition, many pathogenic viruses and bacteria hijack host cell rafts during infection (8 -10). In all of these cases, function depends on selective enrichment of a subset of membrane proteins in rafts. For this reason, it is important to determine how proteins are targeted to rafts.A key feature of raft structure is the tight packing of lipid acyl chains. Raft lipids are probably in the liquid-ordered (l o ) 1 phase, in which lipid acyl chains are extended and ordered (11,12). Many proteins are targeted to rafts by their favorable association with these ordered lipids. For example, raft proteins such as glycosylphosphatidylinositol-anchored proteins, Src family kinases, and heterotrimeric G protein ␣ subunits are linked to saturated acyl chains, which partition well into rafts. Because of this tight acyl chain packing, raft lipids and proteins are insoluble in nonionic detergents and can be isolated from cell lysates as DRMs. Although DRM association of a protein may not provide a quantitative measure of its asso...