Herman Nicolaas Cornelis Berghuijs (2016). Leaf anatomy and photosynthesis; unravelling the CO 2 diffusion pathway in C 3 leaves. PhD thesis. Wageningen University, Wageningen, The Netherlands, with summaries in English and Dutch. 286 pages Optimizing photosynthesis can contribute to improving crop yield, which is necessary to meet the increasing global demand for food, fibre, and bioenergy. One way to optimize photosynthesis in C 3 plants is to enhance the efficiency of CO 2 transport from the intercellular air space to Rubisco. The drawdown of CO 2 between these locations is commonly modelled by Fick's first law of diffusion. This law states that the flux from the air spaces to Rubisco is proportional to the difference in partial pressure between these locations. The proportionality constant is the mesophyll conductance. Its inverse is mesophyll resistance. Mesophyll resistance is a complex trait, which lumps various structural barriers for CO 2 transport and processes that add or remove CO 2 along the diffusion pathway. In order to better understand how and to what extent these factors affect photosynthesis, it is necessary to find a more mechanistic description of CO 2 transport in the mesophyll. The aim of this dissertation is to investigate how leaf anatomical properties and CO 2 sources and sinks along the CO 2 diffusion pathway in C 3 leaves affect the photosynthetic capacity of these leaves.In this study, Solanum lycopersicum was used as a model organism. In a first approach, we developed a model in which we partitioned mesophyll resistance into two sub-resistances. The model assumed that CO 2 produced by respiration and photorespiration was released between the two sub-resistance components. By quantifying these resistances using measured thicknesses, exposed mesophyll and chloroplast surfaces, and assumed diffusive properties, we were able to simulate the effect of various anatomical properties on photosynthesis. A disadvantage of this tworesistance approach is that it assumes either that (photo)respiratory CO 2 release takes place in the outer cytosol or that there is no CO 2 gradient in the cytosol. Therefore, in a second approach we modelled CO 2 transport, production and consumption by use of a reaction-diffusion model. This model is more flexible in terms of determining the Abstract vi location of CO 2 sources and sinks. We developed methods to estimate physiological parameters of this model using combined gas exchange and chlorophyll fluorescence measurements on leaves. The results suggest that the rate of respiration depends on the oxygen partial pressure, which is often not considered in previous photosynthesis models. We also presented a method to calculate the fraction of (photo)respiratory CO 2 that is re-assimilated. We found that this fraction strongly depends on both environmental factors (CO 2 , irradiance), the location of mitochondria relative to the chloroplast, stomatal conductance and various physiological parameters. The reactiondiffusion model and associated methods prese...