Photosynthetic parameters of a microphytobenthic (MPB) biofilm grown in a tidal mesocosm were measured on undisturbed sediment using variable fluorescence-based measurements of electron transport rate (ETR), as well as by ETR and 14 C assimilation measurements in optically thin suspensions of algal cells. Absorption cross-sections of the MPB suspensions were quantified using the quantitative filter technique and by reconstruction using HPLC-derived pigment concentrations. Photosynthetic parameters derived by the 3 methods were compared on 3 days, representing different biofilm growth/[chl a ] conditions, at the start, middle and end of the daytime tidal emersion. Comparisons of ETR and radioisotope-derived photosynthetic parameters measured on optically thin suspensions were not significantly different, confirming that with an appropriate estimation of the irradiance absorbed by Photosystem II (PSII), under optically well-defined conditions, variable fluorescence is a reliable measure of MPB photosynthetic rates. In contrast, significant differences of up to 60% were observed between the maximum photosynthetic capacity (P B max ) measured on undisturbed sediment and in suspensions. These differences were observed at high [chl a] (coinciding with low growth rates) towards the end of emersion periods. Comparison of the effective quantum efficiency (ΔF/F m ') at the highest light steps of photosynthetic-irradiance (P-E) curves suggested that the overestimation was due to the poor definition of the complex sediment optics, which interacted presumably with photo-taxis and/or single species migrations. Definition of the optics within undisturbed sediments, particularly considering the complex effects of migration, is a serious challenge, limiting the application of variable fluorescence techniques in situ on undisturbed sediments.KEY WORDS: Variable fluorescence · 14 C uptake · Microphytobenthos · Maximum photosynthetic capacity · Maximum quantum yield of photosynthesis · Sediment · Absorption cross-section · PAM fluorescence
Resale or republication not permitted without written consent of the publisherAquat Microb Ecol 50: [301][302][303][304][305][306][307][308][309][310][311] 2008 with their own specific advantages and disadvantages (reviewed by Underwood & Kromkamp 1999). In situ tracer incubations measure the fixation of 13 C or 14 C from bicarbonate solution applied to the sediment surface (Middelburg et al. 2000); however, calculations of fixation rates can be difficult due to the unknown specific activity of the tracer in the sediment pore water (Vadeboncoeur & Lodge 1998). This problem may be serious in cohesive sediments (Jonsson 1991), or in dense biofilms where drawdown of the porewater DIC pool is extremely fast and atmospheric CO 2 is the main inorganic carbon source. In contrast, photosynthetic measurements using suspensions of MPB cells in a medium (typically filtered seawater) can give useful information about photosynthetic characteristics under controlled temperature and irradiance cond...