We have developed a procedure for the purification of halorhodopsin in a photochemically active state. Solubilization of membranes from a bacteriorhodopsin-negative Halobacterium strain with octyl glucoside was followed by chromatography on hydroxylapatite and octyl-Sepharose gels. All steps were carried out in high-ionic-strength solutions. The procedure resulted in 270-fold enrichment with a 35% yield. The eluted pigment had an absorption maximum at 575 nm and an A280/A575 ratio of 2. On removal of the detergent by dialysis, the purified halorhodopsin was chemically bleached, regenerated with [3H]-retinal, and reduced with cyanoborohydride. Such samples showed one main and one satellite band after staining or fluorography of NaDodSO4/polyacrylamide gels. The apparent molecular weight of the main band was 25,000. Purified halorhodopsin underwent a photocycle after excitation with pulsed laser light and showed a 9-nm blue shift (at neutral pH) on removal of chloride ion. The pigment also underwent a photoreversible shift at alkaline pH to a form absorbing maximally at 410 nm. All three reactions closely resembled those of membrane-bound halorhodopsin.Three retinal-containing pigments are synthesized by Halobacterium halobium. These membrane-bound pigments are bacteriorhodopsin (bR), halorhodopsin (hR), and the slow rhodopsin-like pigment (s-rhodopsin; sR); they have similar UV and visible absorption spectra, with maxima at 568 nm (bR), 578 nm (hR), and 587 nm (sR), and all three undergo characteristic photochemical cycles after excitation by actinic light (1-4). Whereas bR, the light-driven proton pump, converts light energy into a protonmotive force that can be harnessed by bacterial cells for ATP synthesis (for review see ref. 1), hR is probably involved in electrogenic transport of Cl-into the cells (5). The physiological significance of this light-driven process is not known with certainty. Some evidence suggests that sR participates in the phototactic responses of halobacterial cells (3).Many structural and functional studies require purification of the photoactive chromoproteins. This task is relatively simple for bR, because it is the only protein of the purple membrane that can be fractionated on sucrose gradients (6). In our available halobacteria strains, hR is not so organized and has to be purified by detergent solubilization and subsequent fractionation.Using a strain deficient in bR [determined by flash spectroscopy as described (4, 7) were suspended in 150 ml of 4 M NaCl and lysed by dialysis in the presence of 10 mg of DNase at 4°C for 18 hr against 6 liters of 50 mM Hepes (pH 7.0). The lysate was cleared of large debris (containing little or no hR) by centrifugation (6,000 x g, 15 min) and the membranes were then sedimented (260,000 x g, 1 hr). The bluish pellet was suspended in 50 mM Hepes buffer (pH 7.0). The sedimentation and resuspension of membranes was repeated twice in Hepes buffer and then once in 4 M NaCl. Finally, the membranes were stored in 4 M NaCl at 4°C at 10-20 mg/ml.Pro...