The phylogenetic composition of bacterioplankton communities in Lake Tanganyika was studied by sequencing 16S rRNA gene clones. Four clone libraries were constructed from oxic epilimnion and anoxic hypolimnion samples collected during the dry season of 2002 in the northern and southern basins. Clone library analysis revealed a bacterial community composition (BCC) differing from previously studied freshwater systems and clear differences between both epi-and hypolimnion and the northern and southern basins. We detected few representatives of the Actinobacteria, Bacteroidetes, Cyanobacteria, and Alpha-and Betaproteobacteria commonly found in freshwater environments in temperate and cold regions, but observed a remarkably high number of clones belonging to Chloroflexi and Gammaproteobacteria. This was especially the case in the hypolimnion, but also in the epilimnion in the south of the lake, which suggests that the BCC may be influenced by seasonal upwelling. In total, nearly half of the detected operational taxonomical units were not closely related to bacteria previously observed in freshwater environments. Even in the epilimnetic clone libraries, genotypes commonly reported from oxic freshwater environments (e.g. ACK4, LD12, Sta2-30) were rare or absent.KEY WORDS: Bacterial community composition · Clone library · Lake Tanganyika · Freshwater · Tropical lake
Resale or republication not permitted without written consent of the publisherAquat Microb Ecol 50: [113][114][115][116][117][118][119][120][121][122] 2008 samples in a series of thermal stratified lakes in northeastern Indiana, USA, studies on the BCC in anoxic hypolimnia or monimolimnia are also scarce. In a study based on the construction of clone libraries in the meromictic Lake Cadagno, Switzerland, the authors detected a high contribution of Gammaproteobacteria (mainly belonging to the phototrophic Chromatiaceae) near the oxic-anoxic boundary (Bosshard et al. 2000).From the studies on BCC in freshwater environments, a fairly restricted set of genotype clusters typical for freshwater environments seems to emerge (Hiorns et al. 1997, Glöckner et al. 2000, Zwart et al. 2002, Lindström et al. 2005. This suggests the existence of typical freshwater clusters of bacteria that evolved in freshwater environments and were not merely 'transported' from soil. Recently, Eiler & Bertilsson (2004) detected some new freshwater clusters in Swedish lakes, presumably associated with cyanobacterial blooms. Genotypes found in freshwater, but diverging from the typical freshwater clusters often originate from very peculiar habitats such as hot springs, activated sludge, aquifers and rice fields. The geographic range of the studies carried out so far precludes conclusions on whether these typical freshwater clusters have a global distribution or are mainly restricted to temperate regions. More studies including freshwater ecosystems from tropical regions and from the southern hemisphere are needed to determine whether the same clusters of freshwater bacteria o...