Hydrophobicity is generally related to the determination of log
P
value, which is a key parameter in the structure/activity relationship, especially in pharmaceutical and biomedical fields. The aim of this article is to focus on the capillary electrophoresis (CE)‐related techniques for the log
P
(or log
D
for ionizable compounds) determination of small molecules and polymers. These techniques include micellar electrokinetic chromatography (MEKC), microemulsion electrokinetic chromatography (MEEKC), liposome electrokinetic chromatography (LEKC), and vesicle electrokinetic chromatography (VEKC). Comparison is made based on several parameters, such as surfactants chemical nature or composition and pH of the analysis buffer. Characterization of polymer hydrophobicity is a challenging issue because polymeric analytes (and especially polyelectrolytes) tend very often to remain at the water/organic phase interface making the classical shake‐flask method difficult to apply. In addition, polymers present distributions of composition and molar masses generating hydrophobicity distribution that should be characterized beyond the determination of average log
P
(or log
D
) values. Recently, determination of polymer log
D
distribution has been addressed and was reviewed in detail in the case of polycationic gene delivery vectors.