The structural arrangement of oligosaccharides comprising the core region of Rhizobium etli CE3 lipopolysaccharide (LPS) has been elucidated through the characterization of the LPSs from two R. etli mutants. One mutant, CE358, completely lacks the O-chain polysaccharide, while the second mutant, CE359, contains a truncated portion of this polysaccharide. This structural arrangement of the core oligosaccharides in these LPSs was determined using electrospray ionization mass spectrometry, tandem mass spectrometry, and methylation analysis. Mild acid hydrolysis of the CE359 LPS produces two major core oligosaccharides: a tetrasaccharide (1) with the structure ␣-D-Galp- (136) Bacteria belonging to the family Rhizobiaceae are Gram-negative and are able to form nitrogen-fixing symbiotic relationships with legume plants. The surface polysaccharides, including the lipopolysaccharides (LPSs), 1 are involved in the normal infection process. Mutants that lack the O-chain polysaccharide portion of their LPSs are symbiotically defective in that they are unable to form normal infection threads (1, 2), and/or they cannot invade the root nodule cells (3-5). In addition, it has been shown that structural changes in the LPS occur during symbiotic infection and that most of these changes appear to take place in the O-chain polysaccharide portion of the LPS (6 -14). These structural adaptations in response to the environment of the host plant are likely to be important in order for the symbiont bacterium to induce a nitrogen-fixing nodule.In addition to the importance of determining the symbiotic "virulence" of these bacteria, rhizobial LPSs can have unique structural features compared with the LPSs from enteric bacteria. The most studied LPSs, the topic of this report, are those from Rhizobium etli and Rhizobium leguminosarum. All of the LPSs examined from wild-type or parent strains of these species are devoid of phosphate. Their lipid A region has a trisaccharide backbone consisting of one each of galacturonosyl (GalA), GlcN, and 2-aminogluconosyl (GlcN-onate) residues, the latter two residues being O-and N-acylated with -hydroxy fatty acids and one very long chain fatty acid, 27-hydroxyoctacosanoic acid (15). This lipid A also appears not to carry any acyloxylacyl substituents. The core region has been found to consist of two oligosaccharides (16, 17) as shown below.