LIS1 and NDEL1 are known to be essential for the activity of cytoplasmic dynein in living cells. We previously reported that LIS1 and NDEL1 directly regulated the motility of cytoplasmic dynein in an in vitro motility assay. LIS1 suppressed dynein motility and inhibited the translocation of microtubules (MTs), while NDEL1 dissociated dynein from MTs and restored dynein motility following suppression by LIS1. However, the molecular mechanisms and detailed interactions of dynein, LIS1, and NDEL1 remain unknown. In this study, we dissected the regulatory effects of LIS1 and NDEL1 on dynein motility using full-length or truncated recombinant fragments of LIS1 or NDEL1. The C-terminal fragment of NDEL1 dissociated dynein from MTs, whereas its N-terminal fragment restored dynein motility following suppression by LIS1, demonstrating that the two functions of NDEL1 localize to different parts of the NDEL1 molecule, and that restoration from LIS1 suppression is caused by the binding of NDEL1 to LIS1, rather than to dynein. The truncated monomeric form of LIS1 had little effect on dynein motility, but an artificial dimer of truncated LIS1 suppressed dynein motility, which was restored by the N-terminal fragment of NDEL1. This suggests that LIS1 dimerization is essential for its regulatory function. These results shed light on the molecular interactions between dynein, LIS1, and NDEL1, and the mechanisms of cytoplasmic dynein regulation.Cytoplasmic dynein is a multi-subunit protein complex that moves along microtubules. It is involved in various cellular and subcellular activities, such as cell migration, vesicle transport, and organelle positioning (1, 2). Dynein interacts with several accessory proteins to accomplish this wide range of activities throughout the cell cycle (3). The best-characterized of these accessory proteins is dynactin, a multiprotein complex that is almost universally associated with dynein-dependent functions (4). Platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 (PAFAH1B1; commonly known as lissencephaly 1, LIS1) 3 and its binding partner nuclear distribution gene E homolog (A. nidulans)-like 1 (NDEL1) also contribute to many dynein functions involving nuclear and spindle positioning and centrosomal movement (3).LIS1 was first identified as a protein associated with the smooth brain disease, lissencephaly (5, 6). Homozygous loss of Lis1 or Ndel1 is lethal in mice (7, 8). The C terminus of LIS1 binds to cytoplasmic dynein (9), whereas the N terminus contains a LisH homodimerization domain (10). Between these domains is a coiled-coil region that imparts flexibility to the LIS1 dimer (11), suggesting that LIS1 can alter its conformation between an "open state," in which the coiled-coil regions form a random helix, and a "closed state," in which the coiled-coil regions form a superhelix (12). NDEL1 contains an N-terminal coiled-coil domain that interacts with LIS1, and an unstructured C terminus that directly binds to dynein (13,14). LIS1 and NDEL1 are thought to associate with cytoplas...