List of new names and new combinations previously effectively, but not validly, published

Abstract

The purpose of this announcement is to effect the valid publication of the following effectively published new names and new combinations under the procedure described in the Bacteriological Code (1990 Revision). Authors and other individuals wishing to have new names and/or combinations included in future lists should send three copies of the pertinent reprint or photocopies thereof, or an electronic copy of the published paper to the IJSEM Editorial Office for confirmation that all of the other requirements for valid publication have been met. It is also a requirement of IJSEM and the ICSP that authors of new species, new subspecies and new combinations provide evidence that types are deposited in two recognized culture collections in two different countries. Note that the date of valid publication of these new names and combinations is the date of publication of this list, not the date of the original publication of the names and combinations. The authors of the new names and combinations are as given below. Inclusion of a name on these lists validates the publication of the name and thereby makes it available in the nomenclature of prokaryotes.

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

“…The latter includes the so-called plant beneficial and environmental (PBE) species ( Suárez-Moreno et al, 2012 ), many of which are plant-associated (e.g., those with plant growth promoting activities, the symbiotic diazotrophs and free-living species with diazotrophic, bioremedial and antibiotic activities) ( Depoorter et al, 2016 ; Estrada-de los Santos et al, 2016 ). Because of this heterogeneity, new genera [e.g., ‘ Caballeronia’ ( Gyaneshwar et al, 2011 ) and ‘ Paraburkholderia’ ( Sawana et al, 2014 )] has been introduced to accommodate most of the PBE species ( Oren and Garrity, 2015a , b , 2017 ), while retaining the pathogens in Burkholderia sensu stricto. Most recently, a third genus, Robbsia was introduced to accommodate the phytopathogen previously referred to as B. andropogonis ( Lopes-Santos et al, 2017 ).…”

Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T

“…The nod genes nolY–nolA–nodD2–nodD1YABCSUIJ–nolO–nodZ in the genomes of ERR11 T and 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T are organized similarly as homologous genes identified in the genomes of 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+110 T , 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+4, and 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+05525. The nodulation and nitrogen fixation genes of ERR11 T share high sequence similarity with peanut–nodulating type strain 10.1601/nm.27386 10.1601/strainfinder?urlappend=%3Fid%3DLMG+26795 T [ 42 , 43 ] The denitrification genes nap, nor and nos of ERR11 T and nap and nor of 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T are homologous to the genes in found in the genome of 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+110 T , a known denitrifying rhizobium, indicating that ERR11 T and 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T may involve in reduction of nitrate, nitric oxide, or nitrous oxide. Based on the phylogenetic analyses of recA–glnII–rpoB sequences, the strains (ERR2A, ERR2B, ERR11, ERR13, 10.1601/strainfinder?urlappend=%3Fid%3DCIR+42, 10.1601/strainfinder?urlappend=%3Fid%3DCSR+10B, IAR8 and AURI6) belonging to the novel species formed a unique group within the genus 10.1601/nm.1459 .…”

“…The similarity between strains in the novel group and strains in the closest species was 96% and they all showed 95% average gene sequence similarity with strains in 10.1601/nm.1462 (Table 5 ). The type strain ERR11 T showed 94–95% similarity of recA–glnII–rpoB gene sequence with the type strains of neighbor branches; 10.1601/nm.1463 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T [ 37 ], 10.1601/nm.23808 10.1601/strainfinder?urlappend=%3Fid%3DCGMCC+1.10947 T [ 41 ], 10.1601/nm.27386 10.1601/strainfinder?urlappend=%3Fid%3DLMG+26795 T [ 42 , 43 ] and 10.1601/nm.27430 58 2–1 T [ 44 ].

Fig.

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“…Among the reference genomes presented in the Fig. 1 , completely sequenced 10.1601/nm.1460 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+6 T [ 3 , 70 ] and 10.1601/nm.24498 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+110 T [ 71 , 72 ] and draft sequences of 10.1601/nm.27386 26795 T [ 42 , 43 ], 10.1601/nm.1460 10.1601/strainfinder?urlappend=%3Fid%3DUSDA+4 [ 73 ], 10.1601/nm.1459 sp. 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+15615 [ 74 ], 10.1601/nm.1462 strains (10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+83689, 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+05525) [ 74 ], 10.1601/nm.1463 strains (10.1601/strainfinder?urlappend=%3Fid%3DCGMCC+1.3531, 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+35157) [ 37 , 74 ], 10.1601/nm.23808 10.1601/strainfinder?urlappend=%3Fid%3DCGMCC+1.10947 T [ 41 ], 10.1601/nm.23259 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+23303 T [ 75 ] and 10.1601/nm.25639 BR3351 T [ 76 ] were collected from the DOE–JGI genome portal [ 53 ] as well as from the GenBank database [ 77 ].…”

Draft Genome Sequence of Pannonibacter indicus Strain HT23 T (DSM 23407 T ), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India

“…This bacterium was isolated from a tropical hot spring at Athamallik, Orissa, India (1, 2). Strain HT23 T is able to grow in the presence of 500 mM of sodium arsenate in low-phosphate medium.…”