As one of the most diverse and productive ecosystems known, and one of the first ecosystems to exhibit major climate-warming impacts (coral bleaching), coral reefs have drawn much scientific attention to what may prove to be their Achilles heel, the thermal sensitivity of reef-building corals. Here we show that climate change-driven loss of live coral, and ultimately structural complexity, in the Seychelles results in local extinctions, substantial reductions in species richness, reduced taxonomic distinctness, and a loss of species within key functional groups of reef fish. The importance of deteriorating physical structure to these patterns demonstrates the longer-term impacts of bleaching on reefs and raises questions over the potential for recovery. We suggest that isolated reef systems may be more susceptible to climate change, despite escaping many of the stressors impacting continental reefs.biodiversity ͉ climate change ͉ coral bleaching ͉ resilience ͉ reef fish G lobal warming is causing reef corals around the world to expel their photosynthetic symbionts, resulting in ''bleaching'' and extensive coral mortality (1-3). Widespread impacts of bleaching are predicted (4), although empirical data on the long-term effects on other components of the ecosystem are lacking. Of particular interest are reef fish, which support local fisheries and tourism (5), and are crucial for the resilience of coral reefs (6-8). Existing studies of the indirect effects of bleaching mediated coral mortality on reef fish assemblages have been short-term and indicated limited change (9-11); however, the longer-term implications of coral loss may be much more substantial (12). Long-term responses may result from changes in the physiological condition of species following coral loss (13) or through processes such as the breakdown of the physical matrix of the remaining reef structure.The global mass bleaching event of 1998 was devastating in the western Indian Ocean, where the El Niño event interacted with the Indian Ocean dipole (14), resulting in 75-99% loss of live coral (15). The Seychelles suffered particularly badly; live coral was reduced by Ͼ90% across the entire range of the inner islands (2, 16), with no apparent depth refuge. With widely accepted predictions of all reef regions of the world suffering similar large-scale degradation through bleaching in coming decades (1, 2), the study of such locations provides a unique opportunity to understand longer-term impacts on other components of the ecosystem, with implications for resilience and the persistence of vulnerable species.We surveyed coral and fish communities at 21 sites across the inner islands of the Seychelles in 1994 (17) and 2005. Over 50,000 m 2 of three distinct coral reef habitats were surveyed: fringing reefs with carbonate framework, coral growth on a granitic substrate, and patch reefs on a sand, rock, or rubble base (17). The study specifically aimed to assess changes in benthic variables after the 1998 bleaching event and relate these to changes in the ...