Low level of genetic differentiation among populations of the rare species Allium regelianum A.K. Becker ex Iljin from the Volgograd region detected by ISSR-analysis

Background. The current natural habitat of Tulipa suaveolens Roth rapidly decreases. In order to work out the strategy of the species’ preservation, evaluation of its intraand interpopulation polymorphism is required.Materials and methods. Molecular-genetic ISSR markers were used to analyze 125 samples from 10 populations of T. suaveolens occurring in Volgograd Province and 4 populations from Saratov Province.Results. ISSR analysis revealed high intrapopulation polymorphism (73–89%) in T. suaveolens populations form Volgograd Province. AMOVA attributed the largest proportion of variability (74.3%) to intrapopulation polymorphism. Interpopulation differences account for 25.7%. Total subdivision of populations (FST) was 0.257; total gene flow (Nm) between populations was 0.723. According to Bayesian analysis and clustering with both UPGMA and Neighbor Joining methods, all the studied T. suaveolens samples from Volgograd Province make up a large genetic group: within that group none of the potential subgroups may be associated with a particular place of collecting. The NewHybrids software was applied, and the results pointed to the hybrid nature of most samples. Samples of three populations from Saratov Province made up a separate genetic group; those samples fell under the category of parent forms.Conclusion. Considering that genetic subdivision of T. suaveolens populations within the administrative borders of Volgograd Province is insignificant, while all the province’s natural parks and a number of protected natural areas undertake measures to preserve the species, the existing conservation strategy may be recognized as effective and sufficient.

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iPBS polymorphism of rare relict and endangered Allium species growing on the territory of Kazakhstan Altai

Rayzer¹,

Hapilina²

2020

Agrarian Bulletin of The

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Abstract. The purpose of the study. The estimation of genetic polymorphism of Kazakhstan populations of rare relict and endemic Allium species. The novelty of the research is the use of the modern molecular genetic iPBS (Inter- Primer Binding Site Polymorphism) method of DNA amplification to assess the genetic diversity of different populations of Allium sp., collected in their natural habitats in the Kazakhstan Altai. Methods. Samples of medicinal relict and endangered species A. ledebourianum, A. altaicum, A. microdiction were collected in the places of their natural growth in the territory of the Kazakhstan Altai. DNA was isolated from 3–5 day sterile seedlings using lysis STAB buffer with RNaseA. PBS primers were used to assess the genetic diversity of different populations of Allium spp. The amplification results obtained using different PBS primers were evaluated in the GenAlex 6.5 macro program for Excel. Results. The polymorphism of 16 genotypes of the rare relict and endangered Allium sp. was analyzed using 7 PBS primers. Clearly distinguishable amplicons were obtained, the number of which varied depending on the primer used. The dendrogram, based on UPGMA analysis, grouped the studied genotypes into 2 main clusters, one of which included samples from the A. altaicum population, and the second cluster included samples from the A. ledebourianum population. A. microdiction represented by one sample did not enter any cluster, and formed a basal branch in the dendrogram. The results of the study have revealed a high degree of iPBS polymorphism and genetic diversity in rare relict and endangered Allium sp. Practical significance. The use of the molecular genetic iPBS method allows to identify a high level of polymorphism, which can serve as a basis for the identification of various genotypes of the Allium sp., which will significantly supplement traditional preservation methods of natural populations of this genus.

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Low level of genetic differentiation among populations of the rare species Allium regelianum A.K. Becker ex Iljin from the Volgograd region detected by ISSR-analysis

Cited by 3 publications

References 25 publications

Genetic Differentiation and Clonality in a Local Population of the Caucasian Endemic Trifolium polyphyllum C.A. Mey. (Fabacae)

Genetic Differentiation and Clonality in a Local Population of the Caucasian Endemic Trifolium polyphyllum C.A. Mey. (Fabacae)

Genetic Diversity of Tulipa Suaveolens Roth Populations in Volgograd Province

iPBS polymorphism of rare relict and endangered Allium species growing on the territory of Kazakhstan Altai

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