DNA supercoiling is essential for all living cells because it controls all processes involving DNA. In bacteria, global DNA supercoiling results from the opposing activities of topoisomerase I, which relaxes DNA, and DNA gyrase, which compacts DNA. These enzymes are widely conserved, sharing >91% amino acid identity between the closely related species
Escherichia coli
and
Salmonella enterica
serovar Typhimurium. Why, then, do
E
.
coli
and
Salmonella
exhibit different DNA supercoiling when experiencing the same conditions? We now report that this surprising difference reflects disparate activation of their DNA gyrases by the polyamine spermidine and its precursor putrescine.
In vitro
,
Salmonella
DNA gyrase activity was sensitive to changes in putrescine concentration within the physiological range, whereas activity of the
E
.
coli
enzyme was not.
In vivo
, putrescine activated the
Salmonella
DNA gyrase and spermidine the
E
.
coli
enzyme. High extracellular Mg
2+
decreased DNA supercoiling exclusively in
Salmonella
by reducing the putrescine concentration. Our results establish the basis for the differences in global DNA supercoiling between
E
.
coli
and
Salmonella
, define a signal transduction pathway regulating DNA supercoiling, and identify potential targets for antibacterial agents.