Male haplotypes and haplogroups differences between urban (Rimini) and rural area (Valmarecchia) in Romagna region (North Italy)

Ferri, Gianmarco; Ceccardi, Stefania; Lugaresi, Federica; Bini, Carla; Ingravallo, Francesca; Cicognani, A; Falconi, Mirella; Pelotti, Susi

doi:10.1016/j.forsciint.2007.06.007

Cited by 14 publications

(7 citation statements)

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“…In addition, the observed allelic diversity varied between 0.514+/-0.056 for the less polymorphic locus DYS393 and 0.928 +/-0.019 for the marker of greater variability DYS385 (combination of the genotype a/b) ( Table 2). These diversity indicators show values similar to those registered in different European populations (Roewer et al 2001, Schmidt et al 2003, Martin et al 2004, Ferri et al 2008, and in cosmopolitan groups from Argentina (Marino et al 2007.…”

Section: Y-strs Haplotypessupporting

confidence: 86%

“…The data obtained in this study were compared with those published by other authors in relation to seven worldwide populations, two European: Italy (N= 163;Ferri et al 2008) and Spain (N= 164;Martin et al 2004), two African: Mozambique (N= 102; Alves et al 2003) and Equatorial Guinea (N= 112;Arroyo-Pardo et al 2005), a cosmopolitan Argentine population: Córdoba (N= 100; Salas et al 2008) and two South Amerindian populations: Toba of the Argentine Chaco (N= 49; Toscanini et al 2008) and Guaraní-Kaingang of Brazil (N= 46; Leite et al 2008).…”

Section: Discussionmentioning

confidence: 99%

“…95% (81/85) of the haplotypes could be assigned to a unique haplogroup (HG) with a > 99% a posteriori probability (Table 1). The most frequent haplogroup was R1b (38%: 31/81), that is also the lineage of major prevalence in Europe, mainly in the Western and Mediterranean regions, and is associated to modal haplotype: DYS19*14, DYS390*13, DYS389I*29, DYS389II*24, DYS391*10 or DYS391*11, DYS392*13, DYS393*13, DYS385*11-14 (Presciuttini et al 2001, Roewer et al 2001, Schmidt et al 2003, Brion et al 2004, Sims et al 2007, Ferri et al 2008, Marino et al 2010. Secondly, the HG E1b1b was registered (15%: 12/81), which predominates in the northwest, south and east of Africa, and in the Middle East, while in Europe it has a higher presence in the Balkan Mountains, followed by Italy and Spain (Underhill et al 2001, Semino et al 2002, Cruciani et al 2004, Luis et al 2004.…”

Section: Haplogroup Inference and Phylogeography Of The Y-str Profilesmentioning

confidence: 99%

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Y-chromosomal STR haplotype diversity in a sample from the Metropolitan Area of Buenos Aires (Argentina)

et al. 2012

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El objetivo de este trabajo fue analizar el origen de los haplotipos del cromosoma Y en una muestra poblacional del Área Metropolitana de Buenos Aires (AMBA), y comparar estos resultados con los obtenidos previamente a nivel mitocondrial. Se determinaron 17 marcadores Y-STRs en 85 donantes no emparentados. Un total de 85 haplotipos únicos fueron observados. La diversidad haplotípica fue de 1,000 +/- 0.0018, y la diversidad genética media de 0,680+/-0,095. Los linajes paternos evidenciaron una homogeneidad genética de raíces Europeas (93%), procedentes principalmente de Italia y España. La contribución amerindia paterna asociada al sub-haplogrupo Q1a3a fue relativamente baja (6%). La menor proporción de haplotipos amerindios y el elevado número de linajes maternos (44%) de ese origen, revela que ha habido un aporte diferencial por género en la historia de mestizaje de esa población. Se observó un único perfil E1b1a, el cual es predominante en África subsahariana. Estos datos, conjuntamente con la información histórica y demográfica, nos permite afirmar que el bajo aporte amerindio y subsahariano observado en la muestra del AMBA, sería el resultado de las migraciones recientes, iniciadas a mediados del siglo XX, principalmente desde el norte de Argentina y de países limítrofes de elevada composición nativa y, en menor medida, africana.

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Section: Y-strs Haplotypessupporting

confidence: 86%

Section: Discussionmentioning

confidence: 99%

Section: Haplogroup Inference and Phylogeography Of The Y-str Profilesmentioning

confidence: 99%

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Y-chromosomal STR haplotype diversity in a sample from the Metropolitan Area of Buenos Aires (Argentina)

et al. 2012

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“…1,774 previously published Y-chromosome records were obtained from the literature representing populations from the Balkans [49], Burkina-Faso [50], Ethiopia [50], Italy [51], Kenya [50], Saudi Arabia [52], Slovakia [53], and Yemen [52]. In addition 2,884 previously published data from our laboratory representing populations from Cyprus, Egypt, Lebanon, Libya, Jordan, Morocco, Palestine, Syria and Tunisia were added to this study.…”

Section: Methodsmentioning

confidence: 99%

Y-Chromosome and mtDNA Genetics Reveal Significant Contrasts in Affinities of Modern Middle Eastern Populations with European and African Populations

et al. 2013

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The Middle East was a funnel of human expansion out of Africa, a staging area for the Neolithic Agricultural Revolution, and the home to some of the earliest world empires. Post LGM expansions into the region and subsequent population movements created a striking genetic mosaic with distinct sex-based genetic differentiation. While prior studies have examined the mtDNA and Y-chromosome contrast in focal populations in the Middle East, none have undertaken a broad-spectrum survey including North and sub-Saharan Africa, Europe, and Middle Eastern populations. In this study 5,174 mtDNA and 4,658 Y-chromosome samples were investigated using PCA, MDS, mean-linkage clustering, AMOVA, and Fisher exact tests of FST's, RST's, and haplogroup frequencies. Geographic differentiation in affinities of Middle Eastern populations with Africa and Europe showed distinct contrasts between mtDNA and Y-chromosome data. Specifically, Lebanon's mtDNA shows a very strong association to Europe, while Yemen shows very strong affinity with Egypt and North and East Africa. Previous Y-chromosome results showed a Levantine coastal-inland contrast marked by J1 and J2, and a very strong North African component was evident throughout the Middle East. Neither of these patterns were observed in the mtDNA. While J2 has penetrated into Europe, the pattern of Y-chromosome diversity in Lebanon does not show the widespread affinities with Europe indicated by the mtDNA data. Lastly, while each population shows evidence of connections with expansions that now define the Middle East, Africa, and Europe, many of the populations in the Middle East show distinctive mtDNA and Y-haplogroup characteristics that indicate long standing settlement with relatively little impact from and movement into other populations.

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“…Other populations with low genetic diversity values when compared to the present results include those from Croatia (R st =0.0077, P=0.0148, Grskovic et al, 2011 ), Slovenia (R st =0.0497, P=0.0000, Sterlinko et al, 2001), Hungary (R st =0.0806, P=0.0000, Füredi et al, 1999;Egyed et al, 2000;Beer et al, 2004;Völgyi et al, 2009;Pamjav et al, 2017), Greece (R st =0.0943, P=0.0000, Parreira et al, 2002;Robino et al, 2004;Bosch et al, 2006;Kovatsi et al, 2009;Katsaloulis et al, 2013;Martínez et al, 2016) and North Macedonia (R st =0.1000, P=0.0000, Spiroski et al, 2005;Jakovski et al, 2019;Jankova et al, 2019). The highest genetic distance was observed when our study population was compared with the populations of Belgium (R st = 0.2341, P=0.000, Roewer et al, 2001;Maesschalck et al, 2005;Mertens et al, 2007;Purps et al, 2014;Claerhout et al, 2020), Italy (R st =0.2133, P=0.0000, Grignani et al, 2000;Presciuttini et al, 2001;Ghiani et al, 2002;Cerri et al, 2005;Robino et al, 2006;Turrina et al, 2006;Onofri et al, 2007;Ferri et al, 2008;Ferri et al, 2009;Rodríguez et al, 2009;Verzeletti et al, 2009;Brisighelli et al, 2012;Piglionica et al, 2013;Robino et al, 2015;Rapone et al, 2016;Sarno et al, 2016;…”

Section: Resultsmentioning

confidence: 60%

Contemporary population genetics data for 23 Y-STR loci in the general Bosnian-Herzegovinian population

Jordamović

Kojović

Doğan

et al. 2021

GenApp

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Bosnia and Herzegovina is located in the South-Eastern Europe, characterized by numerous historical influences, massive migration processes and complex population structure. For that reason, the aim of this study is to provide an accurate and precise update of the population genetics data of allele frequencies on 23 Y-STR loci in Bosnia and Herzegovina using larger sample size. For this purpose, 480 adult male individuals from the general population have been genotyped over 23 Y-STR loci contained in the PowerPlex Y23 system. Population genetics parameters have been calculated, namely allele and haplotype frequencies, gene and haplotype diversity, as well as Rst and P values for the assessment of interpopulation differences. The obtained results are in close agreement with previously published data for Bosnian-Herzegovinian population, as well as for local subpopulations. This study offers significantly increased resolution and information content, with 454 unique haplotypes. Population comparison reveals no statistically significant differences between the study population and 12 European populations used for comparison, as visualized through an MDS plot and neighbour-joining phylogenetic tree. This study offers representative data for local Y chromosomes that can be used for forensic applications, paternity and kinship testing, as well as for genealogical studies.

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Male haplotypes and haplogroups differences between urban (Rimini) and rural area (Valmarecchia) in Romagna region (North Italy)

Cited by 14 publications

References 7 publications

Y-chromosomal STR haplotype diversity in a sample from the Metropolitan Area of Buenos Aires (Argentina)

Y-chromosomal STR haplotype diversity in a sample from the Metropolitan Area of Buenos Aires (Argentina)

Y-Chromosome and mtDNA Genetics Reveal Significant Contrasts in Affinities of Modern Middle Eastern Populations with European and African Populations

Contemporary population genetics data for 23 Y-STR loci in the general Bosnian-Herzegovinian population

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