†These authors contributed equally to this work.Constructing a eukaryotic cilium/flagellum is a demanding task requiring the transport of proteins from their cytoplasmic synthesis site into a spatially and environmentally distinct cellular compartment. The clear potential hazard is that import of aberrant proteins could seriously disable cilia/flagella assembly or turnover processes. Here, we reveal that tubulin protein destined for incorporation into axonemal microtubules interacts with a tubulin cofactor C (TBCC) domain-containing protein that is specifically located at the mature basal body transitional fibres. RNA interference-mediated ablation of this protein results in axonemal microtubule defects but no effect on other microtubule populations within the cell. Bioinformatics analysis indicates that this protein belongs to a clade of flagellum-specific TBCC-like proteins that includes the human protein, XRP2, mutations which lead to certain forms of the hereditary eye disease retinitis pigmentosa. Taken with other observations regarding the role of transitional fibres in cilium/flagellum assembly, we suggest that a localized protein processing capacity embedded at transitional fibres ensures the 'quality' of tubulin imported into the cilium/flagellum, and further, that loss of a ciliary/flagellar quality control capability may underpin a number of human genetic disorders.Key words: basal body, chaperone, flagellum, intraflagellar transport, retinitis pigmentosa, tubulin, tubulin cofactor C, trypanosome Eukaryotic cilia and flagella are evolutionarily conserved organelles that perform a diversity of biological functions, ranging from motility to sensory perception and are vital to human health. Defects in cilium/flagellum function underpin a wide range of inherited human disorders including respiratory disease, retinal degeneration as well as more complex developmental disorders such as Bardet-Biedl syndrome (BBS) and hydrocephalus (1). The construction of a flagellum/cilium, involving assembly of several hundred distinct proteins (2-5), is made more difficult by the fact that in most eukaryotes, assembly occurs in a ribosome-free cellular compartment distinct, and ultimately distant, from the normal cellular cytoplasm (6). This assembly mechanism provides additional challenges and necessitates accurate intracellular targeting, processing and transport of proteins into the cilium/flagellum.With a few exceptions (7,8), cilium/flagellum assembly relies upon an evolutionarily conserved bi-directional transport mechanism known as intraflagellar transport (IFT) (reviewed in 9). Transitional fibres radiating from the mature basal body demarcate the boundary of the cilium/ flagellum compartment and are pivotal to this process acting as both docking sites for IFT motor proteins and regulating entry of IFT particles into the cilium/flagellum (10,11). Molecular understanding of IFT has advanced rapidly in recent years, yet our knowledge of events relating to recruitment and processing of proteins prior to IFT-mediated...