“…3D cultures relevant for activity probing include networks embedded in a extracellular matrix (ECM)-like hydrogel scaffold (Irons et al, 2008; Iwashita et al, 2014) and 3D neuronal cultures devoid of ECM (Bosi et al, 2015), which can be probed using 3D electrode arrays (Musick et al, 2009) or optical (Pautot et al, 2008) approaches. Optical imaging methods, particularly calcium imaging (Cossart et al, 2005; Shein et al, 2008; Herzog et al, 2011; Dana et al, 2014), support neuronal population activity recording at cellular resolution, and avoid the spike sorting problem associated with extracellular electrodes. The optical alternative can also be used to show correlations between neuron activity and morphology (Cossart et al, 2005) and is particularly well suited for distributed 3D populations (Edelman and Keefer, 2005; Irons et al, 2008; Baker and Chen, 2012; Lai et al, 2012; Dana et al, 2014; Bosi et al, 2015; Ulloa Severino et al, 2016).…”