Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov.

Huang, Xiaofang; Liu, Yu Juan; Dong, Junde; Qu, Lingyun; Zhang, Yanying; Wang, Fa‐Zuo; Tian, Xinpeng; Zhang, Si

doi:10.1099/ijs.0.052779-0

Cited by 57 publications

(56 citation statements)

References 33 publications

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“…Consequently, we propose to combine the family Draconibacteriaceae into the family Prolixibacteraceae. The name Draconibacteriaceae Du et al 2014 would be regarded as a later heterotypic synonym of Prolixibacteraceae Huang et al 2014. On the other hand, the genus Marinifilum was completely separated from all known families in the order Bacteroidales in the phylogenetic trees reconstructed by three methods (Fig.…”

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confidence: 95%

“…However, the name Prolixibacteraceae is retained because this name is not illegitimate since the preceding proposal was based on a phylogenetic analysis without Meniscus glaucopis (Huang et al, 2014). Consequently, we propose to combine the family Draconibacteriaceae into the family Prolixibacteraceae.…”

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confidence: 99%

“…The topologies of the trees determined by the three methods were almost identical. In the phylogenetic trees of the 16S rRNA gene sequences reconstructed using the NJ, ML and BI methods, strain Fu11-5 T was located near Draconibacterium orientale FH5 T (Du et al, 2014) and formed a distinct sublineage with the genera Meniscus (Irgens, 1977), Prolixibacter (Holmes et al, 2007), Sunxiuqinia (Qu et al, 2011), Mangrovibacterium (Huang et al, 2014) and Draconibacterium (Du et al, 2014) (Fig. 2).…”

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confidence: 99%

“…The type species is Mariniphaga anaerophila. Na et al, 2009;Ruvira et al, 2013); 3, Marinilabiliaceae (n510; Gao et al, 2013;Krieg et al, 2011;Miyazaki et al, 2012;Sorokin et al, 2011;Yang et al, 2014;Zhao & Chen, 2012;4, Porphyromonadaceae (n512;Hardham et al, 2008;Jabari et al, 2012;Krieg et al, 2011;Sakamoto & Benno, 2006;Sakamoto et al, 2009;Shkoporov et al, 2013); 5, Prevotellaceae (n54; Downes et al, 2013;Krieg et al, 2011;Moore & Moore, 1994;Morotomi et al, 2009);6, Prolixibacteraceae (n56;Du et al, 2014;Holmes et al, 2007;Huang et al, 2014;Irgens, 1977;Qu et al, 2011;Takai et al, 2013;present study);7, Rikenellaceae (n53;Abe et al, 2012;Krieg et al, 2011). Members of all families stain Gram-negative and are non-spore-forming.…”

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confidence: 99%

“…Recently, the two families Prolixibacteraceae and Draconibacteriaceae have been proposed for two sublineages: the former accommodates Prolixibacter, Mangrovibacterium and Sunxiuqinia (Huang et al, 2014) and the latter accommodates Draconibacterium (Du et al, 2014). In the phylogenetic tree reconstructed by Du et al (2014), the genus Draconibacterium was indicated to form a distinct sublineage that branched at the periphery of the five known families in the order Bacteroidales with the genera Mangrovibacterium, Marinifilum, Prolixibacter and Sunxiuqinia by a bootstrap percentage of 91 %, but the phylogenetic independence of the genus Draconibacterium from the genus Marinifilum and other related genera in this sublineage was not well supported, as shown by the low bootstrap percentage of 63 %.…”

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confidence: 99%

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Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov.

Iino

Mori

Itoh

et al. 2014

International Journal of Systematic and Evolutionary Microbiology

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A mesophilic, chemoheterotrophic bacterium, strain Fu11-5T, was isolated from tidal-flat sediment from Tokyo Bay, Chiba, Japan. Cells of strain Fu11-5T were facultatively aerobic, Gram-negative, non-sporulating, non-motile and rod-shaped (1.9–6.9 µm long). Strain Fu11-5T grew optimally at 35–37 °C and pH 6.5–7.0 and with 1–2 % (w/v) NaCl. Oxygen and l-cysteine were used as an alternative electron acceptor and donor, respectively. Strain Fu11-5T also grew fermentatively on some pentoses, hexoses and disaccharides and soluble starch. Succinic acid was the major end product from d-glucose. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain Fu11-5T was affiliated with the order Bacteroidales , and its nearest neighbours were members of the genera Meniscus , Prolixibacter , Sunxiuqinia , Mangrovibacterium and Draconibacterium, with 87–91 % sequence similarity. Cell morphology, optimum growth temperature and utilization of sugars of strain Fu11-5T distinguished the strain from phylogenetically related bacteria. On the basis of its phenotypic features and phylogenetic position, a novel genus and species are proposed to accommodate strain Fu11-5T, with the name Mariniphaga anaerophila gen. nov., sp. nov. The type strain of Mariniphaga anaerophila is strain Fu11-5T ( = JCM 18693T = NBRC 109408T = DSM 26910T). We also propose to combine the family Draconibacteriaceae into the family Prolixibacteraceae as a later heterotypic synonym and to place the distinct sublineage of the genus Marinifilum in the family Marinifilaceae fam. nov.

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confidence: 99%

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Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov.

Iino

Mori

Itoh

et al. 2014

International Journal of Systematic and Evolutionary Microbiology

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Response of rice growth to soil microorganisms and soil properties in different soil types

Yan

Tang

et al. 2023

Agronomy Journal

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In order to understand the relationship between rice (Oryza sativa L.) yield and the microbial communities and soil properties of different soil types, and to clarify the advantages of rice production characteristics of different soil types, we investigated the soil bacterial communities and soil properties of five representative rice soils (granitic sandy soil, purple clayey soil, red yellow clayey soil, yellow clayey soil, and alluvial sandy soil) and determined their effects on rice yield. The granitic sandy soil showed the greatest potential for increasing rice yield, with a yield of 39.2 g per plant, which was 24.56% higher than the lowest yielding soil type, these differences were related to differences in the soil microbial community and soil properties.There were significant differences in the microbial communities and chemical properties among the soil types, of which the granitic sandy soil type had the highest total nitrogen, available nitrogen, available kalium, and soil organic carbon contents, which were 2.60 g kg −1 , 196.07 mg kg −1 , 230.65 mg kg −1 , and 24.67 g kg −1 , respectively. Moreover, there was a significant correlation among specific bacterial taxa, soil properties, and rice yield, with Bacteroidetes showing a significant positive correlation with rice yield. The results also showed that pH, alkaline soluble nitrogen, and fast-acting potassium were the key soil properties affecting soil communities and rice yield. Both soil properties and soil microbial community influenced rice yield.

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Characteristics of root‐associated bacterial community and nitrogen biochemical properties of twoJaponicarice cultivars with different yields

Dong

Sun

Jiang

et al. 2021

Food and Energy Security

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Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov.

Abstract: Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov.

Cited by 57 publications

References 33 publications

Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov.

Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov.

Response of rice growth to soil microorganisms and soil properties in different soil types

Characteristics of root‐associated bacterial community and nitrogen biochemical properties of twoJaponicarice cultivars with different yields

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