Identification of the barium occurrence and its origin is made on the basis of the groundwater chemistry study. High Ba content has been detected in the Cambrian-Vendian aquifer system in the coastal vicinity of the Gulf of Finland in Estonia and St Petersburg. The dissolution of Ba from witherite as the primary source was derived from the analysis of the aqueous solution equilibrium with Ba-related minerals. It is reflected in the chemical composition of groundwater and influenced by the galenitecalcite-fluorite polymetallic mineralization in Vendian sandstones. The dissolution and re-deposition of carbonates and baryte are confirmed by mineral saturation states for an aqueous solution and distribution of other species in the groundwater of the Cambrian-Vendian aquifer system in North Estonia.