Mapping the evidence of the effects of environmental factors on the prevalence of antibiotic resistance in the non-built environment: Protocol for a systematic evidence map

Gardner, Brian; Betson, Martha; Rosel, Adriana Cabal; Caniça, Manuela; Chambers, M. A.; Contadini, Francesca M.; Villeta, Laura C. Gonzalez; Hassan, Marwa M.; Ragione, Roberto M. La; Menezes, Alexandre De; Messina, Davide; Nichols, Gordon; Olivença, Daniel V.; Phalkey, Revati; Prada, Joaquín M.; Ruppitsch, Werner; Santorelli, Lorenzo A.; Selemetas, Nick; Tharmakulasingam, Mukunthan; Vliet, Arnoud H. M. van; Woegerbauer, Markus; Deza-Cruz, Iñaki; Iacono, Giovanni Lo

doi:10.1016/j.envint.2022.107707

Cited by 11 publications

(3 citation statements)

References 29 publications

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“…The FED-AMR generated new data on the transmission of AMR in an agricultural setting and completed a systematic review of the factors which influence the prevalence of AMR in the environment [59, 62]. These tools are now used cross-sector by consortium partners and been disseminated externally through scientific publications and knowledge exchange activities.…”

Section: Jrps Under the Amr Domainmentioning

confidence: 99%

Communicating and disseminating One Health: successes of the One Health European Joint Programme

Taylor,

Artursson,

Busani

et al. 2024

Journal of Medical Microbiology

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The application of a One Health approach recognizes that human health, animal health, plant health and ecosystem health are intrinsically connected. Tackling complex challenges associated with foodborne zoonoses, antimicrobial resistance, and emerging threats is imperative. Therefore, the One Health European Joint Programme was established within the European Union research programme Horizon 2020. The One Health European Joint Programme activities were based on the development and harmonization of a One Health science-based framework in the European Union (EU) and involved public health, animal health and food safety institutes from almost all EU Member States, the UK and Norway, thus strengthening the cooperation between public, medical and veterinary organizations in Europe. Activities including 24 joint research projects, 6 joint integrative projects and 17 PhD projects, and a multicountry simulation exercise facilitated harmonization of laboratory methods and surveillance, and improved tools for risk assessment. The provision of sustainable solutions is integral to a One Health approach. To ensure the legacy of the work of the One Health European Joint Programme, focus was on strategic communication and dissemination of the outputs and engagement of stakeholders at the national, European and international levels.

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Section: Jrps Under the Amr Domainmentioning

confidence: 99%

Communicating and disseminating One Health: successes of the One Health European Joint Programme

Taylor,

Artursson,

Busani

et al. 2024

Journal of Medical Microbiology

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“…Previous studies have demonstrated that Swift Active Screener, with its active learning algorithm and ranking system, can provide significant time resource savings. Use of Swift Active Screener is growing within environmental sciences [56] and is accepted in medical sciences [13,20]. Using Swift Active Screener may introduce some bias into the systematic map if articles are overlooked as a product of the algorithm and ranking system; however, we expect ~ 20,000 results, making the use of Swift Active Screener necessary and helpful.…”

Section: Screening Processmentioning

confidence: 99%

What evidence exists on the ecological and physical effects of built structures in shallow, tropical coral reefs? A systematic map protocol

Paxton,

Swannack,

Piercy

et al. 2023

Environ Evid

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Background Shallow, tropical coral reefs face compounding threats from habitat degradation due to coastal development and pollution, impacts from storms and sea-level rise, and pulse disturbances like blast fishing, mining, dredging, and ship groundings that reduce coral reefs’ height and variability. One approach toward restoring coral reef structure from these threats is deploying built structures. Built structures range from engineered modules and repurposed materials to underwater sculptures and intentionally placed natural rocks. Restoration practitioners and coastal managers increasingly consider incorporating built structures, including nature-based solutions, into coral reef-related applications. Yet, synthesized evidence on the ecological and physical performance of built structure interventions across a variety of contexts (e.g., restoration, coastal protection, mitigation, tourism) is not readily available to guide decisions. To help inform management decisions, here we aim to document the global evidence base on the ecological and physical performance of built structures in shallow (≤ 30 m) tropical (35° N to 35° S latitude) coral ecosystems. The collated evidence base on use cases and associated ecological and physical outcomes of built structure interventions can help inform future consideration of built structures in reef restoration design, siting, and implementation. Method To discover evidence on the performance of built structures in coral reef-related applications, such as restoration, mitigation, and coastal protection, primary literature will be searched across indexing platforms, bibliographic databases, open discovery citation indexes, a web-based search engine, a novel literature discovery tool, and organizational websites. The geographic scope of the search is global, and there is no limitation to temporal scope. Primary literature will be screened first at the level of title and abstract and then at the full text level against defined eligibility criteria for the population, intervention, study type, and outcomes of interest. Metadata will be extracted from studies that pass both screening levels. The resulting data will be analyzed to determine the distribution and abundance of evidence. Results will be made publicly available and reported in a systematic map that includes a narrative description, identifies evidence clusters and gaps, and outlines future research directions on the use of built structures in coral reef-related applications.

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“…Antimicrobial resistance genes (ARGs) are carried on mobile genetic elements that allow their transfer between different bacterial genera (Flores-Orozco et al, 2023). Antimicrobial resistant bacteria can be carried by humans, animals, animal products, and the environment (Gardner et al, 2023). Among food-associated microorganisms, those carrying ARGs include micrococci, kokurias, coagulase-negative staphylococci (Gardini, Tofalo, & Suzzi, 2003), enterococci (Chajęcka-Wierzchowska, Zarzecka, & Zadernowska, 2021), non-enterococcal lactic acid bacteria (LAB), Bifidobacterium (Ammor, Flórez, & Mayo, 2007), several foodborne bacteria (Caniça, Manageiro, Abriouel, Moran-Gilad, & Franz, 2019), and some yeasts (Wolfe, 2023).…”

Section: Introductionmentioning

confidence: 99%

Tracking the Transfer of Antimicrobial Resistance Genes from Raw Materials to Sourdough Breads

Gargano,

Gambino,

Viola

et al. 2023

Preprint

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Mapping the evidence of the effects of environmental factors on the prevalence of antibiotic resistance in the non-built environment: Protocol for a systematic evidence map

Cited by 11 publications

References 29 publications

Communicating and disseminating One Health: successes of the One Health European Joint Programme

Communicating and disseminating One Health: successes of the One Health European Joint Programme

What evidence exists on the ecological and physical effects of built structures in shallow, tropical coral reefs? A systematic map protocol

Tracking the Transfer of Antimicrobial Resistance Genes from Raw Materials to Sourdough Breads

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