The cyclic AMP (cAMP)-dependent protein kinase A (PKA) signaling pathway plays a role in regulating development, growth, and virulence in a number of fungi. To determine whether PKA plays a similar function in zygomycete fungi, a mutant of Mucor circinelloides was generated that lacks pkaR1, one of the regulatory subunits of PKA. The mutant showed a reduction in growth and alterations in germination rates, cell volume, germ tube length, and asexual sporulation. The lack of pkaR1 gene resulted in a highly decreased, but not null, cAMP binding activity and in a protein kinase activity that was still dependent on cAMP, although with a higher ؊/؉ cAMP activity ratio, suggesting the existence of other cAMP binding activities. Consequently, three proteins analogous to pkaR1 were predicted from the recently sequenced genome of M. circinelloides and were named pkaR2, pkaR3, and pkaR4. Two of the proteins, pkaR2 and pkaR3, with cAMP binding activity were isolated from the wild-type strain and identified by mass spectrometry. The expression of all genes was detected at the mRNA level by semiquantitative reverse transcription-PCR, and they showed a differential expression at different developmental stages. This is the first time that a fungus is reported to have more than one gene encoding the regulatory subunit of PKA.Filamentous fungi are defined by their ability to form highly polarized hyphae, which is a prerequisite for efficient colonization of growth niches and substrate utilization. During vegetative growth, the establishment of polarity is an important initiation step for primary germ tube emergence from the spore/conidium on the one hand, and branch emergence from existing hyphae on the other. Once established, polarity must be maintained during hyphal extension. Structural components of the cytoskeleton (especially actin) play a pivotal role in establishing and maintaining fungal polar growth (10).One of the key regulators of polarity in fungi, as well as of other processes such as development, mating, and virulence is the cyclic AMP (cAMP)-dependent protein kinase A (PKA) (5,14). This enzyme in its inactive form is a tetramer composed of two regulatory subunits (R) bound to two catalytic subunits (C). In response to signals that increase intracellular cAMP levels, cAMP binds to the regulatory subunit and triggers conformational changes that release the active catalytic subunit. In mammalian systems there are four genes coding for the R subunit-RI␣, RI, RII␣, and RII-and three genes coding for the C subunit-C␣, C, and C␥.In several Ascomycota (Saccharomyces cerevisiae, Candida albicans, Aspergillus niger, Aspergillus nidulans, and Aspergillus fumigatus) and two Basidiomycota (Ustilago maydis and Cryptococcus neoformans) PKA C subunits are coded by two or three genes, whereas only one gene codes for the R subunit. Genetic evidences have shown the participation of PKA in cell polarity in some of these models. Thus, in S. cerevisiae pseudohyphal differentiation was altered by deletion of the gene coding for the ...