Abstract. The paper provides a basin-scale assessment of the spatiotemporal distribution of alkalinity in the Mediterranean Sea. The assessment is made by integrating the available observations into a 3-D transport-biogeochemical model.The results indicate the presence of complex spatial patterns: a marked west-to-east surface gradient of alkalinity is coupled to secondary negative gradients: (1) from marginal seas (Adriatic and Aegean Sea) to the eastern Mediterranean Sea and (2) from north to south in the western region. The west-east gradient is related to the mixing of Atlantic water entering from the Strait of Gibraltar with the high-alkaline water of the eastern sub-basins, which is correlated to the positive surface flux of evaporation minus precipitation. The north-to-south gradients are related to the terrestrial input and to the input of the Black Sea water through the Dardanelles. In the surface layers, alkalinity has a relevant seasonal cycle (up to 40 µmol kg −1 ) that is driven by physical processes (seasonal cycle of evaporation and vertical mixing) and, to a minor extent, by biological processes. A comparison of alkalinity vs. salinity indicates that different regions present different relationships: in regions of freshwater influence, the two quantities are negatively correlated due to riverine alkalinity input, whereas they are positively correlated in open sea areas of the Mediterranean Sea.