28Autism spectrum disorder (ASD) is a developmental disorder with no effective 29 pharmacological treatments so far. Gut microbiota has been suggested to 30 contribute to autistic symptoms. However, the key genes and the mechanisms 31 linking gut microbiota and brain dysfunctions in ASD are still unclear. Here, 32 we found deletion of EphB6, an ASD-associated candidate gene, induced 33 dysregulated gut microbiota and autism-like behavior in mice. More 34 importantly, transplanting fecal microbiota from EphB6-deficient mice resulted 35 in disturbed gut microbiota and autism-like behavior in antibiotics-treated 36 C57BL/6J mice. Meanwhile, transplanting fecal microbiota from wild-type mice 37 ameliorated disturbed gut microbiota and autism-like behavior in mice with 38 deletion of EphB6. At the metabolic levels, dysregulated gut microbiota led to 39 vitamin B6 and dopamine defects in EphB6-deficient mice. At the cellular 40 levels, excitation/inhibition (E/I) imbalance in medial prefrontal cortex was 41 induced by gut microbiota-mediated defects of vitamin B6 metabolism in 42 EphB6-deficient mice. Our study uncovers a key role for EphB6 in regulation 43 of social behavior by gut microbiota-mediated vitamin B6 metabolism, 44 dopamine synthesis and E/I balance, suggesting a new strategy for treatment 45 of ASD patients. 46 47 48 51 Autism spectrum disorder (ASD), affecting approximately 1% of the population 52 around the world, is mainly characterized with impaired social interaction and 53 communication, and restricted and repetitive behavior (Lord, Elsabbagh, Baird, 54 & Veenstra-Vanderweele, 2018). So far, only early behavioral and educational 55 interferences show ameliorative effects on autistic symptoms of ASD patients 56 and there are no effective pharmacological therapies for the treatment of core 57 autistic symptoms (Lord et al., 2018). 58 It is generally considered that ASD is caused by genetic, developmental 59 and environmental factors. And the genetic factor is considered to be the most 60 important cause of ASD. With the development of sequencing technique, 61 more and more genes have been found to be related with ASD. 62 EphB6, belonging to the Eph family of receptor tyrosine kinases, plays an 63 important role in regulating Eph receptor signaling networks, T cell functions, 64 development of intestinal epithelium and epithelial homeostasis (Luo, Yu, 65