Abstract. Resistance to quinoline-containing compound has been associated with the Plasmodium falciparum multidrug resistance 1 (pfmdr1) gene. We analyzed wild P. falciparum isolates with high levels of chloroquine and mefloquine resistance for their macrorestriction maps of chromosome 5 and sequence of pfmdr1. Two types of chromosome 5 amplification were found. Eleven of 62 resistant isolates displayed Bgl I fragments larger than 100 kb. Twenty-nine isolates possessed multiple copies of the fragments. We failed to detect any amplification of this region on chromosome 5 in 22 mefloquine-resistant isolates, suggesting that other mechanisms can mediate the mefloquine-resistant phenotype. There was no direct association between pfmdr1 mutations and chloroquine sensitivity. Resistant lines could have Asn-86 and Tyr-184 or Phe-184, the predicted sequence of those chloroquine-sensitive isolates. No mutation at Asn-1042 and Asp-1246 was detected among these chloroquine-resistant isolates. Therefore, a few base substitutions in the pfmdr1 gene may not be sufficient to account for all chloroquine-resistant phenotypes.In Thailand, malaria continues to be a major public health problem due to the emergence of multidrug-resistant organisms. Increasing levels and prevalence of Plasmodium falciparum resistance to choloroquine 1 and mefloquine 2-4 have been reported. This has made the treatment and prophylaxis of malaria increasingly complicated. Although new drugs and several drug combinations are being introduced, it is important to elucidate the molecular mechanism of aminoquinoline drug resistance to develop the appropriate strategies for malaria therapy.A P-glycoprotein homolog (Pgh 1) has been implicated in chloroquine-and mefloquine-resistant phenotypes of P. falciparum. [5][6][7][8] It is encoded by the P. falciparum multidrug resistance 1 (pfmdr1) gene and is localized on the membrane of the digestive vacuole of this parasite. 8,9 High levels of Pgh 1 expression have been shown in drug-resistant cell lines to confer a chloroquine-sensitive phenotype and in yeast to complement the ste 6 functions, 10 suggesting a role as a drug transporter. Controversy exists regarding the pfmdr 1 gene and chloroquine resistance from the work of Wellems and others 11 in that there is no linkage between pfmdr 1 and such resistance. In addition, in vitro selection of parasites for increased chloroquine resistance resulted in parasites with higher sensitivity to mefloquine. 12 Surprisingly, chromosome 5 of these parasite clones demonstrated deamplification and the expression of Pgh 1 was also decreased. 12 In subsequent drug selection studies, the higher levels of mefloquine resistance have been associated with amplification of pfmdr1. 8,13 Data from several field isolates with mefloquine resistance suggested that the amplification of pfmdr1 and an increase in mRNA expression is associated with natural resistance. Furthermore, cross-resistance to other related drugs such as halofantrine and quinine was also observed. [13][14][15] In this s...