Worldwide,
a number of viable populations of fish are found in
environments heavily contaminated with metals, including brown trout
(Salmo trutta) inhabiting the River Hayle in South-West
of England. This population is chronically exposed to a water-borne
mixture of metals, including copper and zinc, at concentrations lethal
to naïve fish. We aimed to investigate the molecular mechanisms
employed by the River Hayle brown trout to tolerate high metal concentrations.
To achieve this, we combined tissue metal analysis with whole-transcriptome
profiling using RNA-seq on an Illumina platform. Metal concentrations
in the Hayle trout, compared to fish from a relatively unimpacted
river, were significantly increased in the gills, liver and kidney
(63-, 34- and 19-fold respectively), but not the gut. This confirms
that these fish can tolerate considerable metal accumulation, highlighting
the importance of these tissues in metal uptake (gill), storage and
detoxification (liver, kidney). We sequenced, assembled and annotated
the brown trout transcriptome using a de novo approach.
Subsequent gene expression analysis identified 998 differentially
expressed transcripts and functional analysis revealed that metal-
and ion-homeostasis pathways are likely to be the most important mechanisms
contributing to the metal tolerance exhibited by this population.