We have developed a method to measure the displacement of a MEMS comb drive using a probe station, by monitoring the minute capacitance changes between the fingers due to the motion. Probe station measurements of the capacitance changes of small comb drives are usually hampered by the relatively large parasitic capacitances present. This can be reduced by using a proper measurement layout design for minimal on-chip capacitance, in combination with a resonant LCR-circuit to counteract the effect of the probe station cable capacitance. The method results in a measurement that, after averaging, enables us to see the motion of a MEMS comb drive with 4 nm peak-to-peak noise sensitivity, corresponding to a capacitance change around 10 aF. Both the effect of comb drive lateral motion and that of levitation are observed.