“…However, a disparity has previously been reported between diagnostic methods used for AGD; Atlantic salmon gills displaying grossly visible lesions did not show the presence of P. perurans at a histological level, with this discrepancy deemed likely to be due to the sampling technique during gill excision, that is only one section from one gill arch was examined for subsequent histological analysis (Clark & Nowak, ) and also loss of mucus and associated amoebae during fixation. It is indeed well established that conventional fixatives often wash away the overlaying mucus layers (Lee et al, ; Mays, Feldhoff, & Nettleton, ) and associated amoebae, hence the need for alternative methods to optimize fixation to enable mucus stabilization and allow a better understanding of parasite interactions with gill mucus during AGD infection (Fernandez et al, ). In the current study, gills for subsequent downstream molecular analysis of P. perurans load were taken from a section of gill displaying grossly visible AGD lesions which would most likely account for the correlation seen.…”