Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil

Nakajima, Yuki; Kitpreechavanich, Vichien; Suzuki, Ken‐ichiro; Kudo, Takuji

doi:10.1099/00207713-49-4-1761

Cited by 122 publications

(86 citation statements)

References 32 publications

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“…PCR-mediated amplification of the 16S rRNA gene and sequencing of the PCR products were carried out as described by Nakajima et al (1999). The 16S rRNA gene sequence of strain RtIII47 T was multiply aligned with related sequences obtained from the GenBank/EMBL/ DDBJ databases using MEGA version 4.0 (Kumar et al, 2008).…”

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confidence: 99%

Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora

Zhang

Ruan

et al. 2012

International Journal of Systematic and Evolutionary Microbiology

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A Micromonospora -like strain, RtIII47T, was isolated from a mangrove swamp in Sanya, Hainan Province, China. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that the strain had a close association with the genus Verrucosispora and shared the highest sequence similarity with Verrucosispora lutea YIM 013T (98.0 %). The strain also showed high 16S rRNA gene sequence similarities to Micromonospora olivasterospora DSM 43868T (97.9 %), Plantactinospora mayteni YIM 61359T (97.9 %), Salinispora tropica CNB-440T (97.8 %), Micromonospora peucetia DSM 43363T (97.7 %), Micromonospora auratinigra TT1-11T (97.7 %), Verrucosispora sediminis CGMCC 4.3550T (97.6 %) and Salinispora arenicola CNH-643T (97.5 %). Phylogenetic analysis based on the gyrB gene sequence supported the conclusion that strain RtIII47T should be assigned to the genus Verrucosispora . DNA–DNA relatedness between strain RtIII47T and the most closely related type strain, V. lutea YIM 013T, was less than 40 %. Chemotaxonomic results confirmed the taxonomic position of the isolate in the genus Verrucosispora , and revealed differences at the species level in polar lipids, whole-cell sugars and DNA G+C content. A combination of physiological and biochemical tests also distinguished this strain from other Verrucosispora species. Based on genotypic and phenotypic observations, strain RtIII47T ( = CGMCC 4.5826T = NBRC 106684T) is proposed as the type strain of a novel species, Verrucosispora qiuiae sp. nov. An emended description of the genus Verrucosispora is also provided.

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confidence: 99%

Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora

Zhang

Ruan

et al. 2012

International Journal of Systematic and Evolutionary Microbiology

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“…PCR amplification of the 16S rRNA gene was carried out as described by Nakajima et al (1999). Sequencing of the cloned PCR product was done by TsingKe (Beijing, China).…”

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Streptomyces arcticus sp. nov., isolated from frozen soil

Zhang

Ruan

Peng

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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Actinomycete strain ZLN234 T was isolated from a frozen soil sample, which was collected from a glacier front in the Arctic. Chemotaxonomic and morphological characteristics were found to be typical of members of the genus Streptomyces. The strain formed a distinct phyletic line in the 16S rRNA gene tree and was closely related to Streptomyces olivochromogenes ATCC 3336 T (98.63 % similarity) and Streptomyces aureus B7319 T (98.56 %). Phylogenetic analysis based on the gyr B gene also showed clearly that strain ZLN234 T was different from all recognized Streptomyces species. The whole-cell sugars were galactose, glucose, ribose and rhamnose. The whole-cell-wall amino acids included alanine, glutamine, glycine and meso-diaminopimelic acid with a minor amount of LL-diaminopimelic acid. The characteristic polar lipids were identified as diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannosides and unknown phospholipids. The major menaquinones were MK-9(H 10 ), MK-9(H 8 ) and MK-9(H 4 ). The major cellular fatty acids comprised anteiso-C 15 : 0 , iso-C 16 : 0 and C 16 : 0 with a small amount of iso-C 16 : 1 v7ϲ and anteiso-C 14 : 0 .The DNA G+C content of strain ZLN234 T was 77.5 mol%. On the basis of these phenotypic, phylogenetic and chemotaxonomic characteristics, strain ZLN234 T (5CCTCC AA 2015005 T 5DSM 100713 T ) is the type strain of a novel species of the genus Streptomyces, for which the name Streptomyces arcticus sp. nov. is proposed.

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“…The amplification of 16S rRNA gene and nucleotide sequencing of PCR product (Macrogen) was carried out using the methods previously described by Nakajima et al (1999) and the universal primers as reported by Lane (1991). The BLAST analysis of 16S rRNA gene was determined using the EzTaxon-e database (Kim et al, 2012).…”

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Actinomadura montaniterrae sp. nov., isolated from mountain soil

Songsumanus

Kudo

Ohkuma

et al. 2016

International Journal of Systematic and Evolutionary Microbiology

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The taxonomic position of the mountain soil actinomycete, strain CYP1-1B T , was clarified by a polyphasic study. The strain produced a single spore, or occasionally a chain of spores, on aerial mycelium. Chemotaxonomic data supported the classification of CYP1-1B T as representing a member of the genus Actinomadura on the basis of the presence of meso-diaminopimelic acid in the peptidoglycan; galactose, glucose, madurose and ribose as whole cell sugars; MK-9(H 6 ), MK-9(H 8 ) and MK-9(H 4 ) as dominant menaquinones; C 16 : 0 , 10-methylated C 18 : 0 and C 18 : 1 !9c as the major cellular fatty acids; and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol manosides as the predominant phospholipids. The DNA G+C content was 74.3 mol%. On the basis of the combination of morphological and chemotaxonomic characteristics, CYP1-1B T was identified as representing a member of the genus Actinomadura. On the basis of the results of 16S rRNA gene analysis, CYP1-1B T , was shown to be closely related to Actinomadura nitritigenes DSM 44137 T (98.9 %). Phenotypic, genotypic and DNA-DNA hybridization data supported the hypothesis that CYP1-1B T represents a novel species of the genus Actinomadura for which the name Actinomadura montaniterrae sp. nov. is proposed. The type strain is CYP1-1B T (=JCM 16995 T =KCTC 39784 T =PCU 349 T =TISTR 2400 T ).

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Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil

Cited by 122 publications

References 32 publications

Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora

Description of Verrucosispora qiuiae sp. nov., isolated from mangrove swamp sediment, and emended description of the genus Verrucosispora

Streptomyces arcticus sp. nov., isolated from frozen soil

Actinomadura montaniterrae sp. nov., isolated from mountain soil

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