The recent development of automated patch clamp technology has increased the throughput of electrophysiology but at the expense of visual access to the cells being studied. To improve visualization and the control of cell position, we have developed a simple alternative patch clamp technique based on microfluidic junctions between a main chamber and lateral recording capillaries, all fabricated by micromolding of polydimethylsiloxane (PDMS). PDMS substrates eliminate the need for vibration isolation and allow direct cell visualization and manipulation using standard microscopy. Microfluidic integration allows recording capillaries to be arrayed 20 m apart, for a total chamber volume of <0.5 nl. The geometry of the recording capillaries permits high-quality, stable, whole-cell seals despite the hydrophobicity of the PDMS surface. Using this device, we are able to demonstrate reliable whole-cell recording of mammalian cells on an inexpensive microfluidic platform. Recordings of activation of the voltage-sensitive potassium channel Kv2.1 in mammalian cells compare well with traditional pipette recordings. The results make possible the integration of whole-cell electrophysiology with easily manufactured microfluidic lab-on-a-chip devices.microfluidics ͉ patch clamp ͉ drug screening ͉ single-cell assay P ipette-based recording of membrane currents is the mainstay in the characterization of cellular ion channels (1). Traditional patch clamp recording is accomplished in a vibration-free environment by using a micromanipulator to position the tip of a glass pipette against the membrane of a cell. Carefully applied negative pressure through the pipette tip causes the membrane to invaginate into the pipette and causes a gigaohm seal to form between the pipette and cell. For whole-cell recording, a second application of negative pressure or electrical current ruptures the captured membrane, providing continuity between the pipette electrode and the cell's cytoplasm. In voltage clamp mode, the membrane is clamped to a preset potential, and the current required to maintain this potential is recorded. Current recordings with different electrical protocols and in the presence of different reagents are used to characterize ion channel properties.Despite the success of the traditional patch clamp technique, it requires complex and expensive setups and remains highly laborious. Thus, the patch clamp technique is limiting in proteomics and drug development screens, which demand highthroughput automated measurements (2). To address this need, chip-based patch clamp devices using micromachined substrates from glass (3), quartz (4), coated silicon nitride (5), and treated elastomers (6) have been proposed. These devices are being developed into commercial platforms for pharmaceutical drug screening and drug safety testing (7-9). All chip-based devices developed to date use a planar geometry, where the recording pore is etched in a horizontal membrane dividing the top cell compartment from the bottom recording electrode compartment (1...