A rapid and unambiguous diagnosis of plant virus diseases is of great importance for agriculture. Investigations of ultrastructural changes induced by viruses within plants by using transmission electron microscopy (TEM) are often necessary to clearly identify the viral agent. Nevertheless, with conventional methods such investigations can take several days and are not suited for the rapid diagnosis of plant virus diseases [1]. Microwave assisted plant sample preparation can help to drastically reduce sample preparation time for TEM investigations with similar or even better ultrastructural results as observed after sample preparation with conventional methods [1,2]. This massive reduction of sample preparation time can be attributed to dielectric heating induced by microwave irradiation which causes a temperature rise inside the whole sample whereas conventional heating starts at the specimen surface. The increase in temperature can then enhance and accelerate the diffusion of reagents, protein crosslinking and the polymerization of the resin [3,4].In this study microwave assisted sample preparation and negative staining were applied on two model virus-plant systems [Nicotiana tabacum plants infected with Tobacco mosaic virus (TMV), Cucurbita pepo plants infected with Zucchini Yellow mosaic virus (ZYMV)] to clearly diagnose the viral agent and ultrastructural alterations by TEM in less than one day. Sample preparation for ultrastructural and cytohistochemical investigations was performed with a commercially available microwave device. With the help of microwave irradiation sample preparation time was reduced to 136 min for ultrastructural investigations and to 89 min for cytohistochemical investigations. After cutting and contrasting of the samples ultrastructural investigations revealed typical features of TMV-disease such as virions accumulating in parallel layers within the cytosol of TMV-infected Nicotiana tabacum plants ( Figure 1a) and of ZYMV disease like cylindrical inclusions in the cytosol of Cucurbita pepo plants (Figure 1b). Additionally, negative staining of the sap of TMV and ZYMV infected leaves revealed rod shaped viral particles with an average length and width of 280 and 17 nm for TMV (Figure 1c) and 707 and 12 nm for ZYMV (Figure 1d). These data were in accordance to the ultrastructural properties and size ranges for these virions described in the literature after samples had been prepared conventionally by chemical fixation and embedding at room temperature. [5,6,7,8]. For cytohistochemical investigations sections of TMV-infected leaves were treated with a primary antibody against TMV coat protein and a secondary gold conjugated antibody which took about 100 min. Gold particles bound to TMV coat protein could be clearly identified in less than 4 hours after the beginning of sample preparation in the areas of cells where TMV accumulated in parallel form (Figure 1e).Summing up, the results presented in this study clearly demonstrate that microwave assisted plant sample preparation for ultrast...