AimsN6‐methyladenosine (m6A) modification is a critical posttranscriptional event in gene regulation. Thus, identifying methyltransferase, demethylase, or m6A binding protein‐mediated m6A modifications in cancer or noncancer transcriptomes has become a promising novel strategy for disease therapy development. However, novel insights into m6A modification in partial bladder outlet obstruction (pBOO) and detailed information about the drivers of bladder remodeling remain to be elucidated. Here, we first characterized the m6A modification landscape in pBOO and investigated potential actionable pharmaceutical targets for future therapies.MethodsWe generated an improved animal model of pBOO in SD rats with urethral meatus stricture induced by suturing. Urodynamic investigations and cystometry were carried out to evaluate the physiologic changes elicited by pBOO. Whole‐transcriptome sequencing (RNA‐seq) and m6A‐modified RNA immunoprecipitation sequencing (MeRIP‐seq) were subsequently performed to analyze the expression pattern associated with bladder remodeling in pBOO.ResultsThe cystometric evaluation of bladder function demonstrated obvious increases in pressure‐related parameters in the pBOO group. Hematoxylin and eosin staining and Masson's trichrome staining validated the occurrence of bladder remodeling. A global elevation in m6A RNA methylation levels was observed in parallel to a increased expression of METTL3 in the pBOO group. High‐throughput sequencing revealed the differences in expression patterns between the pBOO and sham‐operated groups. Furthermore, potential m6A‐modified genes, including CCN2, may serve as new pharmaceutical targets to reverse bladder remodeling.ConclusionsExploring the roles of m6A‐modified genes identified as associated with bladder remodeling by integrating RNA‐seq and MeRIP‐seq data can offer new insights for developing promising treatments for pBOO patients.