SummaryIn oogamous brown algae, mitochondria and mitochondrial DNA (mtDNA) are maternally inherited. In this study, we attempted to clarify the timing of this process through morphological observations and molecular experiments using Undaria pinnatifida (Harvey) Suringar. Immunoelectron microscopy using an anti-DNA antibody indicated that mitochondria have their own mtDNA. The strain-specific single-germling PCR method showed that sperm mtDNA disappeared during the latter part of the one-cell zygote stage; digestion of sperm mitochondria, probably by autophagy, was observed in the one-celled zygote. These data show that in oogamous brown algae, sperm mtDNA is introduced into the cytoplasm of the egg with the mitochondria, and that sperm mitochondria and mtDNA are digested simultaneously, until initiation of the first division of the zygote.