A comprehensive understanding of soil salinity distribution in arid regions is essential for making informed decisions regarding agricultural suitability, water resource management, and land use planning. A methodology was developed to identify soil salinity in Sudan by utilizing optical and radar-based satellite data as well as variables obtained from digital elevation models that are known to indicate variations in soil salinity. The methodology includes the transfer of models to areas where similar conditions prevail. A geographically coordinated database was established, incorporating a variety of environmental variables based on Google Earth Engine (GEE) and Electrical Conductivity (EC) measurements from the saturation extract of soil samples collected at three different depths (0–30, 30–60, and 60–90 cm). Thereafter, Multinomial Logistic Regression (MNLR) and Gradient Boosting Algorithm (GBM), were utilized to spatially classify the salinity levels in the region. To determine the applicability of the model trained at the reference site to the target area, a Multivariate Environmental Similarity Surface (MESS) analysis was conducted. The producer’s accuracy, user’s accuracy, and Tau index parameters were used to evaluate the model’s accuracy, and spatial confusion indices were computed to assess uncertainty. At different soil depths, Tau index values for the reference area ranged from 0.38 to 0.77, whereas values for target area samples ranged from 0.66 to 0.88, decreasing as the depth increased. Clay normalized ratio (CLNR), Salinity Index 1, and SAR data were important variables in the modeling. It was found that the subsoils in the middle and northwest regions of both the reference and target areas had a higher salinity level compared to the topsoil. This study highlighted the effectiveness of model transfer as a means of identifying and evaluating the management of regions facing significant salinity-related challenges. This approach can be instrumental in identifying alternative areas suitable for agricultural activities at a regional level.