“…Mutations in nDNA such as those in p53 , BRCA-1 and BRCA-2 , PTEN , CHEK2 , ATM (ataxia telangiectasia mutated), XPD (xeroderma pigmentosum group D)/ERCC2 (excision repair cross-complementing rodent repair deficiency, complementation group 2 protein), and HER-2 (human epidermal growth factor receptor) have been extensively studied in breast cancer [2–4, 74], whereas mtDNA mutations are only now becoming recognized as an important aspect of breast cancer development and resistance to apoptosis. Studies performed in the last few years have characterized various alterations in mtDNA in breast cancer, including point mutations, mtDNA polymorphisms, mtDNA depletion, microsatellite instability, insertions, changes in mtDNA copy number, homoplasmy, and heteroplasmy of mtDNA [18, 33, 51, 68, 69, 75–99]. Breast nipple aspirate fluid (NAF) with mtDNA mutations at position 204, 207, and 16293 has been suggested to be indicative of breast cancer and mtDNA D-loop mutation has also been proposed as an independent prognostic marker for breast cancer [100, 101].…”