The implementation of energy storage system (ESS) technology with an appropriate control system can enhance the resilience and economic performance of power systems. However, none of the storage options available today can perform at their best in every situation. As a matter of fact, an isolated storage solution’s energy and power density, lifespan, cost, and response time are its primary performance constraints. Batteries are the essential energy storage component used in electric mobility, industries, and household applications nowadays. In general, the battery energy storage systems (BESS) currently available on the market are based on a homogeneous type of electrochemical battery. However, a hybrid energy storage system (HESS) based on a mixture of various types of electrochemical batteries can potentially provide a better option for high-performance electric cars, heavy-duty electric vehicles, industries, and residential purposes. A hybrid energy storage system combines two or more electrochemical energy storage systems to provide a more reliable and efficient energy storage solution. At the same time, the integration of multiple energy storage systems in an HESS requires advanced control strategies to ensure optimal performance and longevity of the system. This review paper aims to provide a comprehensive overview of the control systems used in HESSs for a wide range of applications. An overview of the various control strategies used in HESSs is offered, including traditional control methods such as proportional–integral–derivative (PID) control, and advanced control methods such as model predictive control (MPC), droop control (DC), sliding mode control (SMC), rule-based control (RBC), fuzzy logic control (FLC), and artificial neural network (ANN) control are discussed. The paper also highlights the recent developments in HESS control systems, including the use of machine learning techniques such as deep reinforcement learning (DRL) and genetic algorithms (GA). The paper provides not only a description and classification of various control approaches but also a comparison between control strategies from the evaluation of performance point of view. The review concludes by summarizing the key findings and future research directions for HESS control systems, which is directly linked to the research on machine learning and the mix of different control type strategies.