This Ph.D. dissertation dealt with microbial enhanced oil recovery focusing on adaptation of bacteria to some of subsurface conditions and the mechanisms of enhanced oil recovery through the use of microbes and their metabolic products.The core of this thesis consists of eight articles mostly dedicated to combination of different chemical and physical laboratory methods for experimentation, analysis and interpretation. These include flow injection, fermentation process, chromatographic assay, spectroscopy and image analysis to provide new, simple and robust solutions to understanding of processes during microbial enhanced oil recovery. A review of microbial enhanced oil recovery was presented to better comprehend the problem. The importance of mathematical models used in predicting the structural and morphological of bacteria cells during adaptation stages has been qualitatively discussed. The roles of biogenic acids and gases in carbonate rock dissolution and re-pressurization during microbial fluid rock interactions were also highlighted. The adapted bacteria strain were tested in different in formation waters from the North Sea and also, evaluated for improvement in oil recovery from packed columns by injection of bacteria solution to mimic in-situ oil recovery.Paper I and II presents models that explain the relationships between environmental parameters of pH, electrical conductivity, salinity and gas dissolution based on simple empirical models. This is valuable for understanding some of the interactions in the subsurface during the enhance oil recovery. The measured salinity is similar to those found in oil reservoirs.Paper III gives an overview of the adapted strain of Clostridium tyrobutyricum. The main objective of this study was to investigate the growth and metabolic products capability of this adapted strain and the potential to enhance oil recovery at elevated salinity. It was elaborated that quantities of some of the metabolites, gas, acids and biofilms have direct relationships with salinity of the medium and recovery of 38 % from sandstone and 25 % from chalk was achievable.Paper IV-V highlighted the microbial fluid rock interactions. It was found that porosity increase observed in all the rock samples was mainly due to significant dissolution of carbonate by the organic acids produced during microbial metabolism. The patterns of dissolution lead to reduction in the bulk volume of the chalk samples. The pore volumes were slightly reduced or generally remain the same and the release of Ca 2+ ions into microbial medium.First of all, I wish to give glory to the Almighty, who has given me good health, strength and wisdom in the past decades and the grace to complete this project. During the course of this study, a number of people have provided help and support that have added value in no small amount to the completion of this work, to which I am very grateful. First of all, I would like to thank the Aalborg University for providing me the opportunity to carry out this Ph.D. research. It has been a wo...