The article examines the innovative infrastructure in the management of production risks of agricultural enterprises, which is related to the rules for evaluating alternative scenarios for reducing threats in the production system of agricultural production entities in order to obtain the desired result. A methodical approach to the assessment of factors-tools in the innovative management of production risks, which activate the process of economic development of agricultural enterprises in an institutional environment, is presented. It is proved that the institutional determinants that manage the production risks of agricultural enterprises form a system whose effectiveness depends on the implementation of the relevant directions of economic development of agricultural institutes focused on the introduction of innovations into the production cycle. The structural dialectic connection of the concept of innovative development of agricultural enterprises with the cyclical development of the production system is presented. A structural and logical diagram of a methodical approach to the implementation of the mechanism of innovative management of production risks of agricultural enterprises has been built. A mathematical toolkit for evaluating scenarios of innovative management of production risks of agricultural enterprises is defined. Stimulating and disincentive factors-tools in the innovative management of production risks and their impact on the economic development of agricultural enterprises are determined. In order to determine the optimal scenarios for neutralizing threats to the economic development of agricultural enterprises, models of acceleration (deceleration) of the action of stimulating and disincentive factors-tools in the innovative management of production risks were built. The integral index of the economic development of agricultural enterprises of the agro-climatic regions of Ukraine in the pre-war, war-conflict and post-war periods was calculated. It has been established that due to the accumulation of a significant amount of production, financial, material, technical and innovative potential, the level of economic development of agricultural enterprises of the agro-climatic zones of the Forest-Steppe and Polissia increases, which characterizes their ability to reproduce the production system of agriculture in Ukraine.