“…In coastal waters, this goal is particularly challenging as a result of optical signatures heavily influenced by non-biological particles (Sathyendranath et al, 1989;Tilstone et al, 2005), physically complex waters (e.g. Sharples et al, 2001) as well as an inherent lack of long-term observations required to distinguish natural variations from anthropogenic-driven changes in the underlying phytoplankton dynamics (Araujo et al, 2006;Le Quere et al, 2003). Temporal variability in primary production is ultimately driven by a complexity of facets operating across a range of scales, notably temperature (Harding et al, 1986), nutrients (Kyewalyanga et al, 1998), turbulence (Lewis et al, 1984) and irradiance intensity (Cote and Platt, 1984), as well as biological factors such as community structure (Cote and Platt, 1984) and physiological state (Platt and Sathyendranath, 1993), which together are strongly regulated in coastal systems by the physical structure of the water column (e.g.…”