The present work was aimed at understanding the relationship between the structure of alcohols, aldehydes and acids and their cell toxicity effect on rat liver BRL-3A cells. BRL-3A cells were seeded into 96-well plates and treated with 21 kinds of alcohols, aldehydes and acids in Dulbecco's Modified Eagle Medium (DMEM) culture medium containing 10% fetal calf serum. 24 h later, the growth viability in vitro of BRL3A cells was measured by the 3-(4, 5-Dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) assay. The sequences of cytotoxicity are listed as follows: n-butanol > methanol > isopropyl alcohol > propanol > ethanol > 1, 2-propanediol and 1, 3-propanediol > ethylene glycol > propylene glycol; formaldehyde > oxaldehyde > acetaldehyde > methylglyoxal; formic acid > malic acid > succinic acid > malonic acid > aketoglutaric acid > citric acid > oxalic acid > butyric acid > pyruvic acid > lactic acid > propionic acid > acetic acid. From the results, we can conclude that: for alcohols, the toxicity decreases with the increase of the hydroxyl group when the length of carbon chain is fixed, while toxicity increases with the length of carbon chain increasing (except for methanol) when the number of hydroxyl group is fixed; for aldehydes, the toxicity increases with the number of aldehyde group increasing when the length of carbon chain is fixed, while decreases with the length of carbon chain increasing when the number of aldehyde group is fixed; for acids, the toxicity increases with the number of carboxyl group increasing when the length of carbon chain is fixed (with the exception of formic acid), and increases with the length of carbon chain increasing when the number of carboxyl group is fixed. Under the same condition, the toxicity of aldehydes is greater than that of acids and alcohols.