Repetitive brain stimulation protocols induce plasticity in the stimulated site in brain slice models. Recent evidence from network models has indicated that additional plasticity-related changes occur in nonstimulated remote regions. Despite increasing use of brain stimulation protocols in experimental and clinical settings, the neural substrates underlying the additional effects in remote regions are unknown. Diffusion-weighted MRI (DWI) probes water diffusion and can be used to estimate morphological changes in cortical tissue that occur with the induction of plasticity. Using DWI techniques, we estimated morphological changes induced by application of repetitive transcranial magnetic stimulation (rTMS) over the left primary motor cortex (M1). We found that rTMS altered water diffusion in multiple regions including the left M1. Notably, the change in water diffusion was retained longest in the left M1 and remote regions that had a correlation of baseline fluctuations in water diffusion before rTMS. We conclude that synchronization of water diffusion at rest between stimulated and remote regions ensures retention of rTMS-induced changes in water diffusion in remote regions. Synchronized fluctuations in the morphology of cortical microstructures between stimulated and remote regions might identify networks that allow retention of plasticityrelated morphological changes in multiple regions after brain stimulation protocols. These results increase our understanding of the effects of brain stimulation-induced plasticity on multiregional brain networks. DWI techniques could provide a tool to evaluate treatment effects of brain stimulation protocols in patients with brain disorders.R epetitive electrical brain stimulation induces long-term potentiation (LTP) or depression (LTD) at the stimulated neurons (1-4). In humans, repetitive transcranial magnetic stimulation (rTMS) alters cortical excitability at the stimulated site that outlasts the end of the stimulation, analogous to LTP or LTD in animal models (5, 6), but also affects remote regions, possibly through transsynaptic pathways (7,8). Although rTMS has been proposed as a potential treatment for neurological and psychiatric disorders (9, 10) and as a method to facilitate learning (11), the neural substrates underlying the effects of rTMS on remote regions of the brain remain poorly understood.Diffusion-weighted MRI (DWI) probes water diffusion, a thermal physical phenomena that is characterized by random motion of water molecules (12). Water diffusion is altered by the structures of gray matter (12). DWI can be used to evaluate morphological changes in cortical microstructures (13)(14)(15)(16)(17)(18)(19) and can function as a probe to estimate immediate and transient changes in water diffusion that are associated with ischemia (17) or neuronal firing (13,16,19) and delayed and persistent changes that are associated with long-term plasticity in experimental settings (20) or pathological conditions (15,18,21). Here, using DWI techniques, we examined whether subt...